Prec011112.1
Basic Information
- Insect
- Pasiphila rectangulata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963082625.1
- Location
- OY720241.1:20112310-20134158[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7e-72 9.4e-68 229.8 19.7 1 269 120 377 120 397 0.88 2 2 3 4e+04 -6.5 13.3 1 50 396 447 396 470 0.56
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCAGAAATGGCTACCCCAGGCCAGAGTGACGAAGAGAGCGGAGACGCCTTCACTGACGGCGATTTTGGAGATTCCGATGACGAGACCGTCATGGAACGCGCTAATAACCAATCGTCAAATATTCCTATAAATGAAACTGTATATGAAGAAGTTCAGCAAAAGCTTACCAATGGTAATTCCCAAACGAATGGGTATAAAGAGTCCCCAGAGGCACCAAAAATAAATGGAAGGATAAATAGTGAACCGTCTAGTGATGTGGAAAACGGCATTGCTGAAGTAAGGCGGGACTCGCACGGCGATCAAAACCCTTCGATTGTCGGGATTATTGGAGACCAGCACAACCAGGCCGAGCAGCGCTTGGCGGCGCGACGGGCGGCGCGCGCTGAAGCCCGTGAGATCCGCATGAGAGAGCTGGAGCGACAGCAGAGGGAACAGGAGAACAATGCCGACAAGGCGTACGATATGTATGCAGAGACGGTCGGAAGAAGGGGTCCGCGGCTGGCGGCGCTCAGTCCGGCGGTGGCGCACTCTCCGCGCCGGAGTTCAGAAGATTCGGATGAGACGTTCAGCATCAAAGACTTGAGGCATGAGCTAAAAGAGGTGGAGGAGAAATTCCGCAAAGCGATGATTCTGAACGCGCAGCTCGACAACGACAAGGCGTCGCTCGGCTACCAGCTCGAGCTGCTCAAGGACCGCATCGACGAGCTGCACGAGGACTACGCACAGCTGCAGCGCGAGCACCGCGAGAAGTGCTCGGCTTTCGAGCGGCTGAAGCGCGAGCACGCGTGCGCGCAGCGCGAGCTGGCGGCCGCGCGGGACGCCGTGCGCGCGCgcgacgccgccgccgccgccgccgggcaCGTGTTCTGCGAGGCGccgcccggcgccgccgccgccggcttcGGGGACGTGCCGCCGCTGGCGCTGCTGTCGCACCAGCTGGACCAGATGCTGGGCGACGGGGAGGCTACTCTAGACGTGCGGTTGCAGAACCTGGTCACCGCTAAGCAATCCCTAGAAAGCGAGGTGCGCAAACTGAAGCTGACTCTGAACGAGGAGCGCGCCGCCAGACAAAATGGCGTCGCGTCGCATCACGACGAGCAGTATGAGAGCGAGCTGGAGAGCCTGCGCAAGGCGGCGGCGGAGGCgaaggcgcgggcggcgcgcgcggaggcggaggcggcgctggcggcggcgggcggcgcgcgcctcGAGGCGCAGCTCGCGCGCCTGCGCCAGCGCCACGCCGACCACGACGACAAGGAGGACCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGAGAGGCGCGGGAAGCTCTCAATCGCGTGGAAGAGTTGGAAACGGAGAACAGTCACCTCACCAAGCGGCTGGACAAACTGAAGAACGCGAAGTCCGCACTCCTCAAAGACCTGTGA
- Protein Sequence
- MGHRSEMATPGQSDEESGDAFTDGDFGDSDDETVMERANNQSSNIPINETVYEEVQQKLTNGNSQTNGYKESPEAPKINGRINSEPSSDVENGIAEVRRDSHGDQNPSIVGIIGDQHNQAEQRLAARRAARAEAREIRMRELERQQREQENNADKAYDMYAETVGRRGPRLAALSPAVAHSPRRSSEDSDETFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELHEDYAQLQREHREKCSAFERLKREHACAQRELAAARDAVRARDAAAAAAGHVFCEAPPGAAAAGFGDVPPLALLSHQLDQMLGDGEATLDVRLQNLVTAKQSLESEVRKLKLTLNEERAARQNGVASHHDEQYESELESLRKAAAEAKARAARAEAEAALAAAGGARLEAQLARLRQRHADHDDKEDQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- -
- 80% Identity
- -