Ealt005232.1
Basic Information
- Insect
- Epirrhoe alternata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963565295.1
- Location
- OY751379.1:12547303-12558850[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-69 8e-65 219.7 26.2 1 269 124 379 124 402 0.88 2 2 0.1 2.8e+03 -2.1 9.4 124 168 421 465 410 476 0.59
Sequence Information
- Coding Sequence
- ATGGGACATCGCTTGGAAATGGCTACTCCTGATAACAGCGATGACGAGAGTGGCGATGCCTTCACCGACGGTGACTTTGGAGACTCTGATGATGAAACTGCCCTTGAACATAATGAAAACAGACCCTCTAATATCCCTGTCAATGAAGCTGCTAATGAAGAAGTCCAACAAAATCTGAATAATGGTAATTCTCATAGTAATGGCTATAAAGAATATCCAGAAGAACCCAAGTTTAATGGACGAAGCAACGGTGAACAGTATTCGAGTGAGATGGAAAATGGTAGTGGTTTAGCAGCAGAAGTAAGACGGGATTCGCACGGTGATCAAAACCCTTCGATTGTAGGAATTATCGGGGACCAGCATAGTCATGCGGAGCAGCGGTTGGCGGCGCGACGAGCGGCGCGGGCGGAGGCGCGTGAGATCCGCATGCGAGAGTTGGAGCGGCAGCAGAGAGAACAGGAGGACCATGCAGACAAGGCGTATGACATGTACGCAGAGACAGTTGGCAGACGGGCACCCCGGCTGGCGGCGCTCAGCCCGGCCGCCGTGCTGTCGCCGCGGCGGAGCTCCGAGGACTCCGCGGATGACACCTTCAGCATCAAAGACTTGAGGCATGAGCTGAAAGAGGTGGAGGAGAAGTTTCGCAAGGCGATGATCCTGAACGCGCAGTTGGACAACGACAAGGCGGCGCTCGGCTACCAGCGCGAGCTGGTGCAGGACCGGATCGACGAGCTGCAGGAGGAACATGCGCAGTTACAGCGTGAGCATCGCGAGAAATGCTCATCACACGAGCGTCTCCGCCGCGAGCATGTGTGCGTGACGCGCGAACTGAGCGACGCCCGGGACGCGGTGCGAGCTCGGgacgcggccgccgccgccgccggcttcCTGTTCGCGGAGGCACCCGCCGCCTCGGAGCCCGGCTCGGGGCCGCAGCTGGTGCTGCTGTCGCAGCAGGCGCACATGCTGCTCCCGGAAGGAGAGGAGACGCTAGACGTACGGTTGCAGAAGCTAGTGAGCTCCAAGCAAGCGTTGGAGTCTGAAGTGCGCAAGCTGAAGCTCACGCTGAACGAGGAACGCGCCGCCAGACAGAATGGCGTCGCGAGCCATCACGACGAACAGCTCGAGAGTGAACTGGAGTCCCTCCGCAAGGCGGCGGGCGAGGCGAaggcgcgggcggcgcgcgccgaGGCCGAGGCGGCGCTGCAAGCCGCCGGCTCCGTGCGGCTCGAGGCGCAGCTACAGAGGCTGCGGGCGAGGCAGGACTCGCACGACGAACTGGAGGAACAGCTGAAGCAGGAGCGACGCAAGCTGCAGAGAGAGGCGCGAGAAGCATTGAACCGGGTTGAAGAGTTGGAGACGGAGAACAGCCACCTCACCAAGAGACTCGACAAActcaagaacgcaaagtcagcATTGCTCAAGGACCTGTGA
- Protein Sequence
- MGHRLEMATPDNSDDESGDAFTDGDFGDSDDETALEHNENRPSNIPVNEAANEEVQQNLNNGNSHSNGYKEYPEEPKFNGRSNGEQYSSEMENGSGLAAEVRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQRELVQDRIDELQEEHAQLQREHREKCSSHERLRREHVCVTRELSDARDAVRARDAAAAAAGFLFAEAPAASEPGSGPQLVLLSQQAHMLLPEGEETLDVRLQKLVSSKQALESEVRKLKLTLNEERAARQNGVASHHDEQLESELESLRKAAGEAKARAARAEAEAALQAAGSVRLEAQLQRLRARQDSHDELEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- iTF_00662240;
- 80% Identity
- -