Pfla005839.1
Basic Information
- Insect
- Perizoma flavofasciatum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_958496245.1
- Location
- OY292425.1:1566078-1579555[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.015 3.6e+02 0.6 0.6 52 91 61 100 32 105 0.59 2 3 2.6e-70 6.2e-66 223.1 19.3 1 271 120 378 120 401 0.86 3 3 0.79 1.9e+04 -5.0 12.7 207 269 395 455 375 473 0.48
Sequence Information
- Coding Sequence
- ATGGGACATCGTTCAGAAATGGCTACGCCTGATAACAGCGACGATGAGAGCGGGGATGCCTTCACCGACGGTGACTTTGGTGACTCTGATGATGAAACCGTCCTGGAACGCGATGATAAaccaaatatttctattatcgAAACGGTCAATGAAGAAGTTCAGCAAAAGTCCATTGGCAATTCTCATAGTAACGGGCTTGTAGAGACTAGCGAAGAGACAAAAGTTAACGGGCGGAGAAACAGTGAACAACCACCTAGTAATGTGGAAAATAATAGTGGCATAGCAGAAGTGAGACGGGATTCACATGGTGATCAAAACCCATCTATCGTCGGAATTCTCGGGGATCAGCACAGCCATGCGGAACAGCGCCTGGctgcgcggcgggcggcgcgggcagAGGCGCGCGAGATCCGCATGCGAGAGCTGGAGCGACAGCAGCGGGAGCAAGAAGACCATGCGGACAAGGCGTATGACATGTACGCAGAGACAGTTGGGAGGCGAGGGCCTAGGCTGGCGGCTCTCAGTCCCGCCGCGGTGCTCTCGCCGAGGCGGAGCTCTGAGGACTCTGCGGACGACACCTTCAGCATCAAAGACTTGAGGcatgACTTGAAAGAAGTTGAAGAGAAATTCCGCAAAGCGATGATCCTGAACGCGCAGTTGGACAATGACAAGGCTTCGCTCGGGTACCAGCTGGAACTACTGCAGGACAGGATCGACGAGTTGCAAGAAGACTACGCACAGTTACAGCGCGAGCACCGCGAGAAATGTTCCGTCCACGAGCGACTAAAGCGCGAGCACGTGTGCGTGGAGCGCGAGCTGAGCGCGGCGCGGGACGCCGTGCGCGCGCGcgaggccgccgccgccgccgccggcttcGTGTTCGCGGAGGCCGCGCCCGGCGCGAGCGCGCCCGGCTTCGGGGACGTGCCGCCGCTGGCGCTGCTCACGCACCACGCCGACCAGATGCTGGGGGAGGGAGAGGAGACCTTAGACGTGCGGTTGCAGAACCTGGTGACGTCGAAGCAGGCGTTGGAGTCGGAGGTCCGCAAGCTGAAGCTGACACTGAACGAGGAGCGCGCCGCCAGACAGAACGGAGTCGCCAACCATCACGACGAACACTATGAAAACGAACTGGAGACGCTCCGTAAGGTGGCGCTGGAGGCGAAGGcgcgcgcggcgcgggcggaggcggaggcggcgcTGCAGGGCGCGGGCAGCGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGCGCGAGGCAGGAGACGCACGACGACCTCGAGGAACAGCTCAAGCAGGAGCGCCGCAAGCTGCAGAGAGAGGCGCGGGAGGCTCTCAATCGGGTTGAGGAGTTGGAAACCGAGAACAGCCACCTCACCAAGAGACTCGACAAGCTCAAGAACGCCAAATCTGCACTGCTCAAGGATCTTTGA
- Protein Sequence
- MGHRSEMATPDNSDDESGDAFTDGDFGDSDDETVLERDDKPNISIIETVNEEVQQKSIGNSHSNGLVETSEETKVNGRRNSEQPPSNVENNSGIAEVRRDSHGDQNPSIVGILGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKASLGYQLELLQDRIDELQEDYAQLQREHREKCSVHERLKREHVCVERELSAARDAVRAREAAAAAAGFVFAEAAPGASAPGFGDVPPLALLTHHADQMLGEGEETLDVRLQNLVTSKQALESEVRKLKLTLNEERAARQNGVANHHDEHYENELETLRKVALEAKARAARAEAEAALQGAGSARLEAQLQRLRARQETHDDLEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- iTF_01170617;
- 80% Identity
- -