Etri004532.1
Basic Information
- Insect
- Epirrhoe tristata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951394285.1
- Location
- OX596140.1:1220168-1232172[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.3e-68 8.2e-64 216.2 29.0 1 270 124 377 124 400 0.87 2 2 0.14 3.5e+03 -2.6 9.4 124 168 420 464 408 475 0.57
Sequence Information
- Coding Sequence
- ATGGGGCATCGCTTGGAAATGGCTACTCCTGATAACAGCGATGACGAAAGTGGCGATGCCTTCACCGACGGTGACTTTGGAGACTCTGATGATGAAACTGCCCTTGAACATAATGAAAGCAGACCCTCTAATATCCCCGTCAACGAAGCTGCTAATGAAGAAGTCCTACAAAATCTGAGTAATGGTAATTCTCATAGTAATGGCTATAAAGAATATCCAGAAGATCCAAAATTTAATGGACGAAGCAACGGAGAAGAGTATTCGAGTGAGATTGAAAATAGTAGTGGCGTAGCAGCAGAAGTAAGACGGGATTCACACGGTGATCAAAACCCTTCGATTGTAGGAATTATCGGAGACCAGCATAGTCATGCGGAGCAGCGGTTGGCGGCGCGACGAGCGGCGCGTGCGGAGGCGCGAGAGATCCGCATGCGGGAGCTGGAGAGGCAGCAGAGGGAACAGGAGGACCATGCTGACAAGGCGTATGACATGTACGCAGAGACGGTCGGCAGACGGGCACCCCGGCTGGCGGCGCTGAGCCCGGCGGCCGTGCTGTCGCCGCGTCGGAGCTCCGAGGACTCCGCGGATGATACCTTTAGCATTAAAGACTTGCGGCATGAGCTGAAAGAGGTGGAAGAGAAGTTTCGCAAGGCGATGATCCTGAACGCGCAGTTGGACAACGACAAGGCGGCCCTCGGCTACCAACGAGAACTGCTGCAGGACAGGATCGACGAGCTGCAGGAGGAACATGCGCAGTTACAGCGCGAGCACCGCGAGAAATGCTCATCACACGAGCGTCTCCGTCGCGAGCATGTGTGCGTGACGCGCGAGCTGCGGGACGCGCGGGACGCGGCGCGGGCCAGGGACGCGGCCGCGGCCGTCGCCGGCTTCCTGTTCGCGGAGGCACCCGCGCAGCCCGACCGCCAGGGCCCGCAGCTAGTGCTGCTGTCGCAGCAGGCGCACATGCTGCTCGGAGAAGGAGAGGAGACGCTAGACGTGCGGTTGCAGAAGCTAGTGAGCTCCAAGCAGGCGCTGGAGTCGGAGGTGCGCAAGCTGAAACTCACGCTGAACGAGGAGCGCGCGGCCAGGCAGAACGGCGTCGCGTCCCATACCGACGAACAGATTGAGAACGAATTGGAGTCCCTGCGCAAGGCGGCGGGCGAGGCGaaggcgcgggcggcgcgcgccgAGGCCGAGGCGGCGCTGCAGGCCGCCGGCTCCGTGCGCCTCGAGGCGCAGCTGCAGCGGCTGCGGGCGAGGCAAGACTCGCACGACGAAGTCGAGGAGCAGCTCAAGCAGGAGCGACGCAAGCTGCAGAGAGAGGCGCGAGAAGCATTGAACCGGGTTGAAGAGTTGGAGACTGAGAACAGCCACCTCACCAAGAGACTCGACAAACTCAAGAACGCAAAGTCAGCACTGCTCAAGGATCTGTGA
- Protein Sequence
- MGHRLEMATPDNSDDESGDAFTDGDFGDSDDETALEHNESRPSNIPVNEAANEEVLQNLSNGNSHSNGYKEYPEDPKFNGRSNGEEYSSEIENSSGVAAEVRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRAPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQRELLQDRIDELQEEHAQLQREHREKCSSHERLRREHVCVTRELRDARDAARARDAAAAVAGFLFAEAPAQPDRQGPQLVLLSQQAHMLLGEGEETLDVRLQKLVSSKQALESEVRKLKLTLNEERAARQNGVASHTDEQIENELESLRKAAGEAKARAARAEAEAALQAAGSVRLEAQLQRLRARQDSHDEVEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- iTF_00661298;
- 80% Identity
- -