Xspa019486.1
Basic Information
- Insect
- Xanthorhoe spadicearia
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_947086425.1
- Location
- OX352197.1:10777863-10793343[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-70 5.2e-66 223.2 23.2 1 270 124 383 124 404 0.89 2 2 1 2.1e+04 -5.8 12.0 119 170 416 467 410 476 0.65
Sequence Information
- Coding Sequence
- ATGGGGCTTTGGCTAGAAATGGCAACTCCTGATAACAGCGACGAAGAGAGTGGCGATGCCTTTACCGACGCTGACTTCGGAGACTCTGATGATGAAACTGCCCTGAAACATAATGAAAACAGACCCTCTAATATCCCTGTCAATGAAACTGCAAACGCAGAAGTTCAACAAAATCTCACCAATGGAAATTCTCACAGCAATGGATTCAAGGAACTTCCGGAACAATCAAGACTCAATGGACGGAGCAACGGTGAACACTTTTCAAGAGAGGTGGAAAATAGCATTGATTTAGCTGAAGAAGTGAGACGGGATTCACATGGTGATCAAAATCCTTCTATTGTCGGAATTATTGGGGACCAGCATAGTCATGCTGAGCAGCGGCTGGCGGCGCGGCGGGCGGCGCGGGCCGAGGCGAGGGAGATCCGCATGAGGGAGCTGGAGAGGCAGCAGAGGGAACAGGAGGACCATGCGGACAAGGCGTATGACATGTACGCAGAGACAGTAGGCAGACGGGGTCCCCGTCTGGCGGCGCTGAGCCCGGCCGCGGTGCTCTCGCCGCGGCGGAGCTCGGAGGACTCCGCGGATGATACCTTCAGCATCAAAGATTTGAGACATGAGTTGAAAGAGGTTGAAGAGAAGTTCCGCAAGGCGATGATACTGAACGCACAACTGGACAACGACAAGGCGGCGCTCGGATACCAGCGCGAGTTACTACAGGACCGGATCGATGAGTTGCACGAGGAACACGCACAGTTACAGCGCGAGCACCGCGAGAAGTGTTCAGCTCACGAGCGCCTGCGTCGCGAGCACGTGTGCACAGAGCGCGAGCTGCGCGGCGCTCGAGACTCGGTGCGCGCTCGAGACGCGGCCGCCGCCGCCGCGGGCTTTGTGTTCGCGGAGGCGCCGCCCGCCGCACACGCCACCGGCTTCGGTGATGTGCCGCCGTTGGCGCTGCTGTCGCAGGAGGCTGATATGATGCTGGGAGAAGAGGAAGAAACCTTAGACGTCCGGTTGCAGAAGCTAGTCAGTTCTAAGCAGTCGTTGGAGTCCGAAGTGCGCAAGTTAAAGCTCACGTTGAACGAGGAGCGCGCCGCGAGGCAGAACGGTGTCGCCACACATCACGACGAACAGATTGAGAGCGAATTGGATTCCCTCCGCAAGTGCACTGTGGAGGCGAAGGGTCGGGCGGCGCGCGCGGAGGCGGAGGCCGCGCTGCAGGGAGCCGCCGCCGCCCGCCTGGAGGCCCAGCTGCAGCGGCTGAGGGCGCGCCAGGAGACACACGACGAACTGGAGGAACAGCTCAAGCACGAGCGACGCAAGCTGCAGAGAGAGGCGCGGGAAGCATTGAACCGTGTTGAAGAGTTGGAGACAGAGAACAGCCACCTTACCAAGAGACTCGACAAACTCAAGAACGCAAAATCAGCATTACTCAAGGACCTGTGA
- Protein Sequence
- MGLWLEMATPDNSDEESGDAFTDADFGDSDDETALKHNENRPSNIPVNETANAEVQQNLTNGNSHSNGFKELPEQSRLNGRSNGEHFSREVENSIDLAEEVRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKAALGYQRELLQDRIDELHEEHAQLQREHREKCSAHERLRREHVCTERELRGARDSVRARDAAAAAAGFVFAEAPPAAHATGFGDVPPLALLSQEADMMLGEEEETLDVRLQKLVSSKQSLESEVRKLKLTLNEERAARQNGVATHHDEQIESELDSLRKCTVEAKGRAARAEAEAALQGAAAARLEAQLQRLRARQETHDELEEQLKHERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- iTF_01528310;
- 80% Identity
- -