Sbip004313.1
Basic Information
- Insect
- Scotopteryx bipunctaria
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949320045.1
- Location
- OX439444.1:1267227-1277414[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 1.7e+03 -1.7 2.0 49 89 59 102 32 108 0.46 2 3 2.8e-72 3.2e-68 230.6 21.3 1 271 124 382 124 404 0.85 3 3 0.9 1e+04 -4.2 9.4 125 167 428 471 413 479 0.58
Sequence Information
- Coding Sequence
- ATGGGGCATCGTTCAGAAATGGCTACGCCGGATAACAGCGATGATGAGAGCGGAGATGCCTTTACCGATGGAGACTTCGGAGACTCTGACGATGAAACCGTATTGGAACGCGAAGACAACCAACACTCTAACAAACCTGTCAACGAGACCGTCAATGAAGAAGTGcagaaaaaacatacctacgGCAGTTCTCATAGTAATGGGTACAAGGAACCCCTCGAAGAGGCAAAGTTTAATGAACGGAGAAACAGTGAACAACAATCGAGTGATTTAGAAAATTCTAGCGGCACATCAGCAGATATAAGATGGGATTCGCACGGTGATCAGAACCCTTCGATTGTTGGAATTATTGGGGACCAGCACAGTCATGCTGAGCAGCGTTTGGCGGCGCGGCGAGCAGCGCGCGCTGAGGCCCGGGAGATCCGCATGCGCGAGCTGGAGAGACAGCAACGCGAGCAGGAGGATCATGCCGACAAGGCGTATGACATGTACGCAGAGACAGTTGGCAGACGGGGCCCGCGGCTGGCAGCCCTCAGCCCGGCCGCGACGCTGTCGCCGCGGCGGAGTTCCGAGGACTCTGCCGATGACACTTTCAGCATCAAAGACTTGAGGCACGAATTGAAAGAAGTGGAGGAGAAGTTCCGCAAGGCGATGATCCTGAACGCGCAGCTCGACAACGACAAAGCCTCGCTCGGCTACCAGCTGGAACTGCTTAAGGACAGGATCGACGAATTGCAGGAAGAGTACGCACAATTACAGCGTGAGCACAGAGAGAAATGTTCGGCGCACGAGCGGCTAAAGCGCGAGCACGTGTGTGTGGAGCGGGAGCTGGTGGGTGCGAGGGACGCGGTGAGAGCGCGCGAGgccgcggccgccgccgccggcttTGTCTTCGCAGAGGCGCCGCCGGGAGCCCACGCGGCTGGCTTCGGAGACGTCCCGCCTCTGGCGCTGTTGTCGCAACAGGCAGACTCGCTGCTGGGAGAAGGAGAGGCTACGCTGGACGTGCGGTTGCAAAACCTGGTGAGCTCGAAGCAGTCCTTAGAGTCGGAGGTGCGCAAACTGAAGCTCACTCTGAACGAGGAGCGCGCCGCGCGGCAGAACGGCGTCGCCAACCACCACGACGAACAGTACGAAAACGAATTGGAGAGCCTGCGCAAGGCGGCGGCGGAGGCgaaggcgcgggcggcgcgcgcggaGGCGGAGGCGgcgctggcggcggcggcggccgcgcgCAGCGACGCGCAGCTGCAGCGCCTGCGCGCGCGCCAGCACCTGCACGACGACCTCGAGGAACAACTCAAGCAGGACCGCCGCAAGCTGCAGAGAGAGGCGCGAGAGGCACTCAACCGGGTTGAAGAATTGGAGACAGAGAACAGCCACCTCACCAAGAGACTCGACAAACTCAAAAACGCCAAATCAGCCCTCCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEMATPDNSDDESGDAFTDGDFGDSDDETVLEREDNQHSNKPVNETVNEEVQKKHTYGSSHSNGYKEPLEEAKFNERRNSEQQSSDLENSSGTSADIRWDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAATLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEYAQLQREHREKCSAHERLKREHVCVERELVGARDAVRAREAAAAAAGFVFAEAPPGAHAAGFGDVPPLALLSQQADSLLGEGEATLDVRLQNLVSSKQSLESEVRKLKLTLNEERAARQNGVANHHDEQYENELESLRKAAAEAKARAARAEAEAALAAAAAARSDAQLQRLRARQHLHDDLEEQLKQDRRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- -
- 80% Identity
- -