Ptra032998.1
Basic Information
- Insect
- Philereme transversata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963924445.1
- Location
- OZ004355.1:2795730-2813931[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-71 2.4e-66 225.2 20.7 1 273 126 387 126 406 0.86 2 2 0.091 3.6e+03 -1.9 10.1 124 169 426 468 413 481 0.53
Sequence Information
- Coding Sequence
- ATGATGGGGCAACGTTCAGATATGGCTACGCCTGATAACAGTGACGAAGAAAGCGGGGATGCCTTTACCGACGGTGATTTCGGAGACTCTGATGATGAAACCGTCCTGGAACGTCATGATAATACATCCTCAAATATTCATGTCaatgaaacaattaatgaagAAGTTCAGCATAAGTTAAATGTAAACAATGCCAATTCTCATAGTAATGGATATAAGGAGCCTCCAGAAGAGCCAAAAGTGAACGGACGTAGGAACAGTGAACAACAATTAAGTGATGTGGAAAATTTTTGTGGTATAGCAGATGTGAGGCGCGATTCACATGGTGATCAAAACCCTTCGATCGTTGGAATTCTCGGAGACCAGCACGGTCATGCGGAACAGCGTCTGGCTGcgcggcgggcggcgcgggcaGAAGCCCGAGAGATCCGTATGAGAGAGCTGGAGAGACAGCAGCGGGAACAAGAAGACCATGCGGACAAGGCGTATGATATGTACGCAGAGACCGTTGGAAGACGGGGTCCTCGATTGGCGGCACTCAGTCCGGCTGTGGTTCACTCGCCGAGACGGAGTTCAGAAGACTCCGCGGACGATACATTTAGTATCAAAGACTTGAGGCATGAACTGAAAGAAGTGGAAGAGAAGTTCCGCAAAGCGATGATTCTGAACGCGCAGATGGACAACGACAAGGCGTCGCTCGGATACCAACTAGAACTGCTCAAGGACAGGATCGATGAGTTACAGGAGGAATACGCACAATTACAGCGTGAGCACAAAGAGAAGTGTTCTGTCCACGAGCGGTTGAAGCGCGAGCACGCGAGCGTGTCGAGCGAGCTGGTGATGGCGCGGGACGCGGTGCTGGCGCGCGAGGCGGCAGCACGCGCGGCGGGCTTCGTGTTCGCGGAGGCGCCGCCGCAGGCGCATGCCGCCGGCTTCGGGGACGTGCCGCCGCTCGCGCTGCTCTCGCAACACGCTGACCTCATGCTGGGCGACGGAGACGCCACGCTGGACGTGCGGTTGGAAGCCCTGGTGAGCTCTAAGCAGGAGCTGGAGTCTGAAGTCCGCAAGCTGAAGCTGACGCTGAACGAGGAGCGCGCCGCCAGGCAGAACGGCGTCGCCAACCATCACGACGAACAGTACGAGAACGAACTGGAAACCCTTCGCAAAGTAGCGATGGAGGCTAAAGGCCGCGCGGCGCGGGCGGAAGCCGAGGCGGCACTGCAGGCCGCGGGCTGCGTGCGCCTCGAGGCACAAGTACAGCGCCTGCGCGCGCGACAGGACTCGCACGACGAACTCGAGGAACAGCTTAAGCAGGAACGACGCAAACTTCAGCGAGAGGCGAGAGAGGCTCTCAACCGAGTTGAGGAGTTGGAGACGGAGAACAACCACCTCACGAAGAGACTCGACAAGCTTAAGAACGCCAAATCAGCACTGCTCAAGGACCTGTGA
- Protein Sequence
- MMGQRSDMATPDNSDEESGDAFTDGDFGDSDDETVLERHDNTSSNIHVNETINEEVQHKLNVNNANSHSNGYKEPPEEPKVNGRRNSEQQLSDVENFCGIADVRRDSHGDQNPSIVGILGDQHGHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAVVHSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQMDNDKASLGYQLELLKDRIDELQEEYAQLQREHKEKCSVHERLKREHASVSSELVMARDAVLAREAAARAAGFVFAEAPPQAHAAGFGDVPPLALLSQHADLMLGDGDATLDVRLEALVSSKQELESEVRKLKLTLNEERAARQNGVANHHDEQYENELETLRKVAMEAKGRAARAEAEAALQAAGCVRLEAQVQRLRARQDSHDELEEQLKQERRKLQREAREALNRVEELETENNHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- -
- 80% Identity
- -