Cleg011732.1
Basic Information
- Insect
- Chesias legatella
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_947359385.1
- Location
- OX375769.1:4703387-4718127[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-71 3.5e-67 226.9 21.3 1 275 120 381 120 403 0.86 2 2 0.12 2.3e+03 -2.4 10.3 119 170 414 465 409 476 0.67
Sequence Information
- Coding Sequence
- ATGGGGTACCGCACAGATATGGCTACGCCGGATAACAGCGACGAAGAAAGCGGGGACGCCTTCACCGACGGGGATTTTGGCGACTCCGATGATGAAACTGTGATGGAGAACGTCGATGGCCAACCCTCCAATATTCCAATCAATGAAACAGTCAATGAGGAAGTTAAACAGAAGCTCACAAACGGAAACTCTCACAGTAATGGCTACCGGGAGCCAGAGGAGGCAGAACTCAACGGGAACAGTGAAAATGAGGCAGCTTATTTGGAAACTAGCAGTGGCGTGGCCGATTTTAGGCGGGATTCGCACGGTGATCAAAATCCATCCATTGTTGGGATCCTCGGTGACCAGCATAATCATGCGGAGCAGCGTCTGGCGGCGCGGCGGGCGGCGCGGGCCGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAAGACCATGCGGACAAAGCGTACGACATGTACGCAGAGACGGTCGGAAGGCGCGGCCCTCGGCTCGCGGCGCTCAGTCCCGCCGCCGCGGCGCTCTCGCACTCGCCGAGGCGGAGTTCTGAGGACTCCGACGACACCTTCAGCGTCAAAGACTTGAGGCATGAACTGAAAGAGGTAGAAGAGAAGTTCCGGAAAGCGATGATCTTGAACGCACAGTTGGACAACGACAAGGCTTCGCTCGGTTATCAACTGGAACTGCTCAAGGACAGGATCGATGAGCTGCAAGAGGAATACGCACAGTTACAGCGCGAGCACCGGGAGAAGTGTTCGGCGCACGAGCGGCTGCGGCGCGAGCACGCGTGCGTGGAGCGCGAGTTGTCGGCCGCGCGGGACGCGGTGCGCGCGCGCGACGCCGCCGCCGCCGACGCCGGGTACCTGTTCGCGGAGGCGCCGCCCGGCGCGCACGCGCCCGGCTTCGGGGACGTGCCGCCGCTCGCGCTGCTCTCACAACACGCGGACCAGATGCTAGGGGACTCGGAGCAAACACTAGACGTGCGGTTGCAAAACGTAGTGACCTCGAAGCAGTCCCTCGAGTGTGAGGTGCGCAAGCTGAAACTGCAGCTGAACGAGGAACGCGCGGCGCGGCAGAACGGCGTCGCCAACCATCACCACGAACACTATGACAATGAACTGGAGGCGCTGCGCAAGTCGAGCGCGGAGGCGAAGGCGCGGGCGGCGCGCGCGGAGGCGGAGGCGGCGCTGCACGCGGCGGGCGGCGTGCGTCTCGAGGCGCAGGTGCAGCGTCTGCGCGCGCGTCAGGAGGCGCACGACGAACTCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCGAGGGAGGCACTCAATCGCGTGGAGGAGTTAGAAACGGAGAACAGTCACCTCACTAAGAGACTCGACAAACTGAAGAACGCCAAATCAGCGCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGYRTDMATPDNSDEESGDAFTDGDFGDSDDETVMENVDGQPSNIPINETVNEEVKQKLTNGNSHSNGYREPEEAELNGNSENEAAYLETSSGVADFRRDSHGDQNPSIVGILGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAAALSHSPRRSSEDSDDTFSVKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEYAQLQREHREKCSAHERLRREHACVERELSAARDAVRARDAAAADAGYLFAEAPPGAHAPGFGDVPPLALLSQHADQMLGDSEQTLDVRLQNVVTSKQSLECEVRKLKLQLNEERAARQNGVANHHHEHYDNELEALRKSSAEAKARAARAEAEAALHAAGGVRLEAQVQRLRARQEAHDELEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- -
- 80% Identity
- -