Coce006745.1
Basic Information
- Insect
- Cosmorhoe ocellata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963675405.1
- Location
- OY776248.1:10955230-10964610[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.064 1.9e+03 -1.4 0.3 59 89 70 101 34 106 0.53 2 3 2.1e-71 6.3e-67 226.7 22.4 1 270 123 375 123 399 0.87 3 3 1 3e+04 -6.3 12.8 125 166 419 464 405 473 0.54
Sequence Information
- Coding Sequence
- ATGGGGCTTCGTTCAGACATGGCAACGCCTGATAATAGCGACGAAGAGAGTGGAGATGCCTTTACTGACGGTGATTTCGGCGACTCCGATGATGAAACAGTCCTGGAACGCGATAACAACAAACCCTCCAATATTCCGCTCAATGAAACGATCAATGAAAAAGTCCAGCAAAATTTAACAAACGGCGATTCTCATAGTAATGGATATAAGTCTGCAGAAGACTCAAAAGTTAATGGACGGAGGAACAGTGAACACCAATCGACTGATGTTGAAAACTGTAGTGGCATAGCAGCAGATATAAGGCGGGATTCGCACGGTGACCAAAATCCTTCGATTGTCGGCATTATCGGAGACCAGCACAGTCATGCAGAACAACGACTAGctgcgcggcgggcggcgcgcgcggagGCGAGGGAGATCCGCATGAGGGAGCTGGAGAGGCAGCAACGGGAGCAAGAGGACCATGCCGATAAGGCGTATGATATGTATGCagAGACGGTTGGCCGGCGGGGTCCCCGGCTGGCGGCCCTCAGCCCGGCCGCGGTGCTGTCGCCGCGGCGGAGTTCAGAAGACTCTGCGGATGACACGTTCAGCATCAAAGACTTAAGGCACGAGTTGAAAGAAGTAGAAGAGAAGTTCCGCAAGGCCATGATCCTGAACGCGCAACTGGACAACGACAAGGCGTCGCTCGGGTACCAGCTCGAGCTGCTGAAGGACAGGATCGATGAGCTGCAGGAGGAGCATGCACAGTTGCAGCGGGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGGCTGCGGCGCGAGCACGTGGGCGTGGAGCGCGAGCTGGagggcgcgcgcggcgccgtgCGCGCGCGGGACGCGGCGGCGCGGGACGCGGGCTACGTGTTCGTGGACGCGGCGCCGGCCGCCGGGCCCGCGCCGGCGCTGGCGCTGCTGTCGCTGGCCGCCAGCCGCCTGCTGCCCGACGGGGAGGACACCCTGGACGTGCGGCTGCAGAACCTGGTGAACTCGAAGCAGGCCCTGGAGTCGGAGGTGCGCAAGCTGAAGCTCACGCTGAACGAGGAGCGCGCCGCCCGCCAGAACGGCGTCGCCAACCACCACGACGAACACTACGAAAGCGAACTGGAGTCGCTGCGCAAGGCGGCGTCGGAGGCGAAGgggcgcgccgcgcgcgcggaGGCGGAGGCGGCGCtggcggcggcgggcgcggcgcggctggAGGCGCAGCTGCAgcgcctgcgcgcgcgcctcGACTCGCACGACGACCTGGAGGAGCAGCTCAAGCAGGAGCGCCGGAAGCTGCAGCGAGAGGCGCGAGAGGCTCTCAACCGGGTGGAAGAGTTGGAGACGGAAAACAGTCACCTCACCAAGCGACTGGATAAACTCAAGAACGCTAAGTCAGCACTCCTCAAGGACCTGTGA
- Protein Sequence
- MGLRSDMATPDNSDEESGDAFTDGDFGDSDDETVLERDNNKPSNIPLNETINEKVQQNLTNGDSHSNGYKSAEDSKVNGRRNSEHQSTDVENCSGIAADIRRDSHGDQNPSIVGIIGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHELKEVEEKFRKAMILNAQLDNDKASLGYQLELLKDRIDELQEEHAQLQREHREKCSAHERLRREHVGVERELEGARGAVRARDAAARDAGYVFVDAAPAAGPAPALALLSLAASRLLPDGEDTLDVRLQNLVNSKQALESEVRKLKLTLNEERAARQNGVANHHDEHYESELESLRKAASEAKGRAARAEAEAALAAAGAARLEAQLQRLRARLDSHDDLEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- -
- 80% Identity
- -