Paff009674.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_961405105.1
- Location
- OY560193.1:1629665-1642275[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.32 4e+03 -2.7 0.2 64 90 73 99 35 104 0.50 2 3 8.8e-71 1.1e-66 225.7 19.9 1 271 120 378 120 401 0.87 3 3 2 2.5e+04 -5.5 13.1 207 269 395 455 375 474 0.49
Sequence Information
- Coding Sequence
- ATGGGACATCGTTCAGAAATGGCTACGCCTGATAACAGCGACGATGAGAGCGGGGATGCCTTTACTGACGGTGACTTTGGTGACTCTGATGATGAAACCGTCCTGGAACGCGATGATAAACCAAATATTTCTATCAACGAAACGGTCAATGAAGAAGTTCAGCAAAATTCCATTGGCAATTCTCATAGTAACGGGTTAATAGAGCCTAGCGAAGAGACAAAAGTTAACGGGCGGAGAAACAGTGAACAACTACCTAGTAATGGGGAAAATAATAGTGGCATAGCAGAGGTGAGACGGGATTCACATGGTGATCAAAATCAATCCATCGTCGGAATTCTCGGGGATCAGCACAGCCATGCGGAACAGCGGCTTGCTGCGCGGCGGGCGGCGCGGGCAGAGGCGCGCGAGATCCGCATGCGAGAACTGGAGCGACAGCAGCGGGAGCAAGAAGACCACGCGGACAAGGCGTATGACATGTACGCAGAGACAGTTGGGAGGCGAGGGCCTAGGTTGGCGGCTCTCAGTCCCGCCGCGGTGCTCTCGCCGAGGCGGAGCTCCGAGGACTCTGCGGACGACACATTCAGCATCAAAGACTTGAGGcatGACTTGAAAGAAGTTGAAGAGAAATTCCGCAAAGCGATGATCCTGAACGCGCAGCTGGACAACGACAAGGCGTCGCTCGGGTACCAGCTAGAACTACTGCAGGACAGGATCGACGAGTTGCAAGAAGACTACGCACAGTTACAGCGCGAGCACCGGGAGAAATGTTCCGTCCACGAGCGGCTAAAGCGCGATCACGCGTGCGTGGAGCGCGAGCTGAGCGCGGCTCGGGACGCGGTGCGGGCGCGCgaggccgccgccgccgccgccgggtTCGTGTTCGCGGAGGCGGCGCCCGGCGCGCGCGCGCCCGGCTTCGGGGACGTGCCGCCGCTGGCGCTGCTCACGCAACACGCCGACCAGATGCTGGGGGAGGGCGAGGCGACCCTAGACGTGCGGTTGCAGAACCTGGTGACGTCGAAGCAGGCCTTGGAGTCCGAGGTCCGCAAGCTGAAACTGACCCTGAACGAGGAGCGCGCCGCCCGACAGAACGGAGTCGCGAACCATCACGACGAACACTATGAAAACGAACTGGAGACGCTCCGTAAGGTGGCGCTGGAGGCGAAAGCGCGCGCGGCGCGGGCGGAGGCCGAGGCGGCGCTGCAGGGCGCGGGCAGCGCGAGGCTCGAGGCGCAGCTGCAGCGGCTGAGAGCGAGGCAGGAGTCACACGACGACCTCGAGGAACAGCTCAAGCAGGAGCGGCGCAAGCTGCAGAGAGAGGCGCGGGAGGCTCTTAACCGGGTTGAAGAGTTGGAAACCGAGAACAGCCATCTCACCAAGAGACTTGACAAGCTCAAGAACGCCAAATCTGCACTGCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEMATPDNSDDESGDAFTDGDFGDSDDETVLERDDKPNISINETVNEEVQQNSIGNSHSNGLIEPSEETKVNGRRNSEQLPSNGENNSGIAEVRRDSHGDQNQSIVGILGDQHSHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGPRLAALSPAAVLSPRRSSEDSADDTFSIKDLRHDLKEVEEKFRKAMILNAQLDNDKASLGYQLELLQDRIDELQEDYAQLQREHREKCSVHERLKRDHACVERELSAARDAVRAREAAAAAAGFVFAEAAPGARAPGFGDVPPLALLTQHADQMLGEGEATLDVRLQNLVTSKQALESEVRKLKLTLNEERAARQNGVANHHDEHYENELETLRKVALEAKARAARAEAEAALQGAGSARLEAQLQRLRARQESHDDLEEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00909728;
- 90% Identity
- iTF_01171487;
- 80% Identity
- -