Basic Information

Insect
Cenopis cana
Gene Symbol
-
Assembly
GCA_951800055.1
Location
OX637482.1:7039425-7058810[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00013 0.01 17.4 1.5 1 23 405 427 405 427 0.96
2 21 0.0064 0.49 12.1 0.6 1 20 433 452 433 455 0.94
3 21 4.5e-05 0.0035 18.8 4.6 1 23 474 496 474 496 0.98
4 21 0.00029 0.022 16.3 4.7 1 23 502 524 502 524 0.99
5 21 5.7e-05 0.0044 18.5 5.3 1 23 530 552 530 552 0.97
6 21 1.2e-05 0.00094 20.6 7.1 1 23 558 580 558 580 0.97
7 21 1.1e-06 8.4e-05 23.9 2.9 1 23 586 608 586 608 0.97
8 21 0.00016 0.012 17.1 6.7 1 23 614 636 614 636 0.97
9 21 3e-05 0.0023 19.4 6.4 1 23 642 664 642 664 0.98
10 21 7.4e-07 5.7e-05 24.4 1.9 1 23 670 692 670 692 0.98
11 21 7.6e-05 0.0058 18.1 7.9 1 23 698 720 698 720 0.98
12 21 2.9e-05 0.0022 19.4 2.2 1 21 726 746 726 746 0.96
13 21 7.6e-06 0.00058 21.3 2.6 2 23 746 767 745 767 0.97
14 21 2e-05 0.0015 20.0 5.4 1 23 773 795 773 795 0.98
15 21 1.2e-05 0.00094 20.6 5.9 1 23 801 823 801 823 0.97
16 21 3.4e-05 0.0026 19.2 7.1 1 23 829 851 829 851 0.97
17 21 4.7e-06 0.00036 21.9 6.0 1 23 857 879 857 879 0.98
18 21 0.00021 0.016 16.8 10.0 1 23 885 907 885 907 0.97
19 21 1.5e-06 0.00011 23.5 4.2 1 23 913 935 913 935 0.98
20 21 0.0011 0.086 14.5 0.3 1 23 942 964 942 964 0.96
21 21 0.048 3.7 9.3 5.1 1 23 974 996 974 996 0.99

Sequence Information

Coding Sequence
ATGAATTCGGAGCATCACAATATCAACACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGCAGCAGTCGGCGAATCTGACTCCGACGACGTCCGCCACAGACCTACGGGTGAACTCCGCGGCTGTAAATGTCGCTTTGTCTAGCGTTGCAAAGTACTGGGTGTTTACAAATCTTTTTCCGGGACCCATACCGCAAGTGTCGGTGTACGGGTTGCCCACTGGAACGAGGATAGAAAATGGGAAACCAGTGCAGGACCTTGGTCAAGCCCATGCGAGCATACTCAATGGGGACCCCAACATTATACTTGGACATCCGGGACAGACTCAAGTCACTGTCTCGGCAGCGCAACAGTTACCACAAATCATTGCTACACAGACACAAACACATGATGTCCTAGCCCATGTTCAGCAACAAGAGCTAGCATCCCAGCATGGTACAGGCAGCTCCGGTCAGGTCACAGCTAATACGGGTCAAACAACGCATCAGCAGGTAGCCAATAATCGGGTCGAGTTTGTACACCATAACATTGATATGGGTCACCACTCGCAACAACACATAATGCAGCAGCAGCTGATGGCGGCAACGCGTCCAGAACACTCCAACCAGCAGATCCAGCTAACAGTGAGTGAAGACGGGATCGTCACAGTGGTAGACCCGGGCGGGGGCAAACTTGTGGATAAAGAAGAGTTGCATGAAGCCATCAAAATGCCTGCGGACCACACCCTTACTGTGCACCAGCTACAGCAAATTGTGGGGCAACAGGTGCTAGAAAACGTAGTCCGCATCGAGCAGGCCACGGGCGAGCCGGCCAACATCCTCGTTACGCAGAACCCAGATGGCACCACGTCGATAGAGGCCAGCGCCGCGGATCCGCTCGCCATCGTCAAGGACGAGAAAAGTGCATCGAAGATAGAGACCGCGCACTTCGCGCTGCCCGCCGAGATCAAGGACCTTAAGAGCATCGACTTAAAGAGTGTAGGAGCGATGGGAATGGAAGGAGCAGTAGTGAAGATATCCGCGGGAGCCGCGGACCACGACATGCACGCCATGTACAAGGTCAACGTGGAAGATCTCTCGCAACTGCTGGCCTACCACGAAGTCTTTGGCAAACTCAATGCCGATGGCCAGCCCCAAGCCAAAGTAATAGGTGAAGTGGAGGTGGAAGCAGGGACTAGCGCTGCCATGTCCGCGGAAGAGAACTCACCCGGACACCATGCGTGCGATATTTGTGGGAAAATATTCCAATTTCGATATCAACTCATTGTTCATAGACGATACCACGGCGAAAGGAAACCGTTCACGTGTCAAGTATGCGGCTCGGCCTTCGCCAATCCCGTGGAGCTGTCGAGACACGGGAAATGCCATCTTGCCGGCGACTCTGCAGACAGGACCGCCAAGCGGTTGACCCAGGACAAACCCTACGCGTGCACCACCTGCCATAAAACGTTCGCGCGGAAGGAGCATCTCGACAACCACGTGCGCAGCCATACCGGGGAGACACCCTACAGATGTCAATTCTGCGCCAAGACGTTCACCCGGAAGGAGCATATGGTGAACCACGTGCGCAAGCACACGGGCGAGACGCCGCATCGCTGCGATATCTGCAAAAAGAGTTTTACCAGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACTCCACACCATTGTCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGCGAACCATATGAGATCACATACGAATGATACCCCATTCCGCTGCGAGCTCTGTGGCAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACCGgcgAAACGCCCCACCGCTGCGACTTCTGTTCGAAGACATTCACCCGCAAAGAACACTTACTGAACCACGTGCGACAACACACGGGCGAGTCTCCGCACCGCTGCAACTACTGCTCCAAGTCGTTCACTCGCCGCGAGCACCTCGTCAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGTCCCAAGGCCTTCACGAGGAAGGACCACTTAGTGAACCACGTGCGCCAGCACACCGGCGAGTCCCCGCACAAGTGCTCGTTCTGCACCAAGTCGTTCACCCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACGGGCGAGTCCCCGCACCGGTGCACGTACTGCGCCAAGTCGTTCACGAGGAAGGAGCACCTCAACAACCACGTCAGGTGCACGTACTGCGCCAAGTCGTTCACGAGGAAGGAGCACCTCAACAACCACGTCAGACAGCATACGGGGGAAACGCCGCACAAGTGCACGTTCTGTCCGAAGGCGTACTCGAGGAAGGAACATCTCAACAACCACATCAGACAACACACGGGTGACGCGCCACACTCGTGCTCCTACTGCAACAAGAGCTTCTCCAGGAAGGAGCATCTCGTTAACCACGTGCGGCAACACACAGGCGAGACGCCGTTTAAATGCACGTATTGCTCGAAGTCGTTTTCGCGCAAGGAGCATCTCACGAACCACGTCCACCTACATACCGGTGAGACGCCGCACAAGTGCCCCTTCTGTACCAAGACCTTCTCGCGTAAGGAGCACTTGACCAACCACGTCAGAATACACACCGGCGAATCCCCTCACCGCTGCGAATTCTGCCACAAGACGTTCACCCGCAAGGAGCACCTCACCAACCACCTGAAGCAGCACACCGGCGACACGCCGCACACCTGCAAGGTGTGCTCCAAGGCTTTCACGCGCAAGGAGCATCTCGTCGCGCACATGAGATCGCACAGTTGCGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCTCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACAACAAGAACGCCGGCGGCGCCCGGCCCTTCCGCTGCGACGTCTGCTCTAAGGACTTCATGTGCAAAGGGCACCTGGCGTCGCACCGGCGCACGCACGCGGCGGCCGCGGACGCGGAGCCGGCGCCGGAGCCCGAGGACTGCGGCGACTGCGTCAAGTGCGAGAAGGAACCCGAGCCCGAGAGGAAGCACGACGTCAGacCGGCAGCGGAAACGAGGCCGGCCGACGGAGCTGTAGCACAAACCCCCCAAGCAAACGCAACTGTGATGCAAATTACCAGCCAACAAGTCCGCGCGCCGACCGTGGGGCTGGACGCGGCAGGCGCCGCCTTCGCGCACCCCGTCACCGTCAACTATTAA
Protein Sequence
MNSEHHNINTGGGQPPGNSEQQSANLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHPGQTQVTVSAAQQLPQIIATQTQTHDVLAHVQQQELASQHGTGSSGQVTANTGQTTHQQVANNRVEFVHHNIDMGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPADHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAIVKDEKSASKIETAHFALPAEIKDLKSIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDSADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCSYCNKSFSRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHTCKVCSKAFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNAGGARPFRCDVCSKDFMCKGHLASHRRTHAAAADAEPAPEPEDCGDCVKCEKEPEPERKHDVRPAAETRPADGAVAQTPQANATVMQITSQQVRAPTVGLDAAGAAFAHPVTVNY