Basic Information

Insect: Tortrix viridana
Gene Symbol: -
Assembly: GCA_963241965.1
Location: OY725182.1:4962587-4977064[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9e-05 0.0072 17.4 1.5 1 23 413 435 413 435 0.96

2 20 0.0043 0.35 12.1 0.6 1 20 441 460 441 463 0.94

3 20 3.1e-05 0.0025 18.8 4.6 1 23 482 504 482 504 0.98

4 20 0.00019 0.016 16.3 4.7 1 23 510 532 510 532 0.99

5 20 3.8e-05 0.0031 18.5 5.3 1 23 538 560 538 560 0.97

6 20 8.3e-06 0.00066 20.6 7.1 1 23 566 588 566 588 0.97

7 20 7.4e-07 5.9e-05 23.9 2.9 1 23 594 616 594 616 0.97

8 20 0.00011 0.0084 17.2 6.7 1 23 622 644 622 644 0.97

9 20 2e-05 0.0016 19.4 6.4 1 23 650 672 650 672 0.98

10 20 5.1e-07 4e-05 24.5 1.9 1 23 678 700 678 700 0.98

11 20 5.2e-05 0.0041 18.1 7.9 1 23 706 728 706 728 0.98

12 20 2.6e-05 0.0021 19.1 6.4 1 23 734 756 734 756 0.98

13 20 4.6e-05 0.0037 18.3 5.2 1 23 762 784 762 784 0.98

14 20 7.9e-06 0.00063 20.7 6.0 1 23 790 812 790 812 0.97

15 20 2.3e-05 0.0018 19.3 7.1 1 23 818 840 818 840 0.97

16 20 3.2e-06 0.00025 21.9 6.0 1 23 846 868 846 868 0.98

17 20 0.00014 0.011 16.8 10.0 1 23 874 896 874 896 0.97

18 20 1.3e-05 0.0011 20.0 2.7 1 23 902 924 902 924 0.96

19 20 0.0011 0.091 13.9 0.3 1 23 931 953 931 953 0.96

20 20 0.022 1.7 9.9 5.0 1 23 963 985 963 985 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9e-05	0.0072	17.4	1.5	1	23	413	435	413	435	0.96
2	20	0.0043	0.35	12.1	0.6	1	20	441	460	441	463	0.94
3	20	3.1e-05	0.0025	18.8	4.6	1	23	482	504	482	504	0.98
4	20	0.00019	0.016	16.3	4.7	1	23	510	532	510	532	0.99
5	20	3.8e-05	0.0031	18.5	5.3	1	23	538	560	538	560	0.97
6	20	8.3e-06	0.00066	20.6	7.1	1	23	566	588	566	588	0.97
7	20	7.4e-07	5.9e-05	23.9	2.9	1	23	594	616	594	616	0.97
8	20	0.00011	0.0084	17.2	6.7	1	23	622	644	622	644	0.97
9	20	2e-05	0.0016	19.4	6.4	1	23	650	672	650	672	0.98
10	20	5.1e-07	4e-05	24.5	1.9	1	23	678	700	678	700	0.98
11	20	5.2e-05	0.0041	18.1	7.9	1	23	706	728	706	728	0.98
12	20	2.6e-05	0.0021	19.1	6.4	1	23	734	756	734	756	0.98
13	20	4.6e-05	0.0037	18.3	5.2	1	23	762	784	762	784	0.98
14	20	7.9e-06	0.00063	20.7	6.0	1	23	790	812	790	812	0.97
15	20	2.3e-05	0.0018	19.3	7.1	1	23	818	840	818	840	0.97
16	20	3.2e-06	0.00025	21.9	6.0	1	23	846	868	846	868	0.98
17	20	0.00014	0.011	16.8	10.0	1	23	874	896	874	896	0.97
18	20	1.3e-05	0.0011	20.0	2.7	1	23	902	924	902	924	0.96
19	20	0.0011	0.091	13.9	0.3	1	23	931	953	931	953	0.96
20	20	0.022	1.7	9.9	5.0	1	23	963	985	963	985	0.99

Sequence Information

Coding Sequence: ATGAATCAAGAGCATCACAGTATCAATACGGGTGGCGGCCAGGCCCCAGGAAGTTCAGAGTCGGAGACTCAAAGAGTTGAATATGCTCAACAACAGCAGCAGCAAACCACTAATCTGGCCCCGACGACGTCTGCGACCGACCTCAGAGTTAACTCGGCGGCGGTAAATGTCGCTTTGTCTAGCGTCGCGAAATACTGGGtgtttacaaatttattccCGGGTCCCATACCGCAAGTGTCAGTGTACGGTCTGCCCACGGGAACGAGGATAGAAAATGGAAAACCAGTTCAgGATCTTGGCCAAGCTCATGCAAGCATTCTCAATGGAGACCCAAATATCATATTGGGGCACCATACAGGGCAGCAGCAAGTCACCGTGTCTGCGGCACAACAGTTACCCCAAATCATTGCCACCCAAACACAAACCCACGATGTATTGGCCCATGCACAACAAGAGCTAGCGACCCAGCAGGGCACGGGCGTCACTGCCCAGGTCACCGCTGGCTCGGGTCAGGCCAACCACCAGCAGGTACCCAATAACCGGGTCGAATTTGTACACCATAATATTGATATGCAACACATCATGCAACAACAGCTGATGGCGGCAGCGCGACCGGAACACTCCAACCAGCAGattcaGCTAACAGTAAGCGAAGACGGTATCGTGACGGTGGTGGACCCCGGCGGAGGCAAGCTGGTCGACAAGGAGGAGCTGCATGAAGCCATCAAGATGCCCGCCGACCACACGCTCACCGTGCACCAGCTGCAGCAGATCGTCGGGCAACAGGTGTTAGAAAACGTGGTCCGCATCGAGCAGGCGACGGGCGAGCCAGCCAACATCCTGGTGACGCAGAACCCTGACGGGACCACGTCGATAGAAGCCAGCGCCGCCGACCCGCTAGCCGTCGTCAAGGATGAGAAAAGCGCTTCCAAAATAGAAACAGCTCACTTCGCTTTGCCCGCTGAAATAAAAGACCTTAAAGGCATTGATTTAAAGAGTGTAGGAGCAATGGGTATGGAAGGAGCAGTAGTGAAGATTTCAGCAGGGGCTGCCGAGCATGATATGCATGCTATGTACAAAGTCAATGTAGAAGATCTCTCGCAACTGTTAGCCTACCATGAAGTTTTTGGTAAACTCAATGCTGATGGACAGCCACAAGCCAAAGTAATAGGCGAAGTGGAAGTAGAAGCGGGCACTAGCGCAGCCATGTCAGCAGAGGAGAACTCCCCGGGACACCATGCCTGTGATATTTGTGGGAAAATATTCCAATTCCGATACCAACTCATAGTTCATAGACGGTACCACGGCGAGCGGAAACCTTTCACGTGTCAAGTGTGTGGGTCTGCCTTTGCTAATCCCGTCGAATTATCAAGACACGGAAAATGCCATCTTGCCGGTGACACGGCAGACAGAACTGCCAAGCGGTTGACTCAAGACAAGCCCTACGCGTGCACGACTTGCCATAAAACGTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGGAGCCACACCGGAGAGACCCCTTACAGGTGTCAATTCTGCGCGAAGACGTTTACCCGTAAAGAGCATATGGTGAACCACGTCCGTAAGCACACGGGAGAGACTCCTCACCGGTGCGACATTTGTAAGAAAAGCTTCACCAGGAAAGAACACTTCATGAACCACGTGATGTGGCATACAGGTGAAACGCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCCAACCATATGAGATCACATACAAGCGATACCCCTTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATATTGTGGCATACTGGCGAAACTCCTCACCGCTGCGACTTCTGTTCAAAAACGTTCACGCGCAAGGAGCACCTGTTGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCAACTACTGCTCCAAGTCCTTCACGCGGCGCGAGCACCTCGTCAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACCAGGAAGGACCATCTCGTAAACCACGTCCGCCAGCACACGGGCGAATCCCCGCACAAGTGCTCGTTCTGCACGAAGTCGTTCACGCGTAAAGAACACCTCACGAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACGCGCAAGGAGCACCTTAACAACCACGTCAGACAGCACACGGGAGAAACTCCGCACAAATGTTCGTTCTGTCCGAAAGCGTACTCTCGGAAGGAGCACCTGAATAACCATGTACGGCAGCATACGGGCGACGCGCCGCACTCCTGCACGTATTGCAACAAGAGTTTCTCGAGGAAGGAGCATCTTGTCAACCACGTTCGGCAACACACGGGCGAGACGCCGTTCAAGTGCACTTACTGTTCAAAATCGTTCTCGCGCAAGGAACACCTCACCAACCATGTTCATCTACACACCGGGGAGACGCCGCATAAGTGTCCCTTCTGCACCAAGACCTTTAGCCGCAAGGAGCATCTCACCAACCACGTCAGAATACACACAGGCGAATCGCCACACCGTTGTGAGTTCTGTCATAAAACGTTTACGCGGAAAGAACACTTGACAAACCATCTGAAGCAGCACACGGGAGACACGACGCACGCGTGTAAGGTCTGCTCCAAGCCTTTCATGCGGAAGGAACACCTTGTTGCGCATATGAGGTCGCACAGTTGCGGCGAGCGGCCGTTCAGTTGCGCCGAGTGCGGGAAGTCGTTCCCGCTAAAAGGCAACCTGCTGTTCCACGAGCGCTCGCACAAcaagggcggcggcggcgcgcgccccTACCGCTGCGACGTGTGCTCAAAGGACTTCATGTGCAAAGGGCACCTGGCGTCGCACCGGCGCACGCACGAGGCGGCGGAGGgcgcggcggaggcggcggACTGCGGCGACGGCGTCAAGTGCGAGGCGGACCCCGCGGAGCCCGAGCGCAAGCACGACGTCCGaccGGCAGCAGAAACCAGAACAGCCGAAAGTGCAGTCGCGCAAAATCCACAAGCGAATGCCACCGTTATGCAAATCACTAGCCAAGTACGCACCGGCGTAACGGCCAGTGCGGGCGGCGTCAATGCCACCTTCACGCACCCCGCGGCGCCGCACCACCCCGTCACCGTCAACTACTAA
Protein Sequence: MNQEHHSINTGGGQAPGSSESETQRVEYAQQQQQQTTNLAPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHHTGQQQVTVSAAQQLPQIIATQTQTHDVLAHAQQELATQQGTGVTAQVTAGSGQANHQQVPNNRVEFVHHNIDMQHIMQQQLMAAARPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPADHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAVVKDEKSASKIETAHFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGAAEHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDTADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTSDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCSFCPKAYSRKEHLNNHVRQHTGDAPHSCTYCNKSFSRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTTHACKVCSKPFMRKEHLVAHMRSHSCGERPFSCAECGKSFPLKGNLLFHERSHNKGGGGARPYRCDVCSKDFMCKGHLASHRRTHEAAEGAAEAADCGDGVKCEADPAEPERKHDVRPAAETRTAESAVAQNPQANATVMQITSQVRTGVTASAGGVNATFTHPAAPHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -