Cfag014691.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia fagiglandana
Gene Symbol
-
Assembly
GCA_963556715.1
Location
OY750799.1:14350150-14367152[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00015 0.0097 17.3 1.5 1 23 454 476 454 476 0.96
2 20 0.0073 0.47 12.0 0.6 1 20 482 501 482 504 0.94
3 20 5.2e-05 0.0034 18.8 4.6 1 23 523 545 523 545 0.98
4 20 0.00033 0.021 16.3 4.7 1 23 551 573 551 573 0.99
5 20 6.5e-05 0.0042 18.5 5.3 1 23 579 601 579 601 0.97
6 20 1.4e-05 0.0009 20.6 7.1 1 23 607 629 607 629 0.97
7 20 1.3e-06 8.1e-05 23.9 2.9 1 23 635 657 635 657 0.97
8 20 0.00018 0.011 17.1 6.7 1 23 663 685 663 685 0.97
9 20 3.4e-05 0.0022 19.4 6.4 1 23 691 713 691 713 0.98
10 20 8.6e-07 5.5e-05 24.4 1.9 1 23 719 741 719 741 0.98
11 20 8.7e-05 0.0056 18.1 7.9 1 23 747 769 747 769 0.98
12 20 4.4e-05 0.0028 19.0 6.4 1 23 775 797 775 797 0.98
13 20 2.3e-05 0.0015 19.9 5.4 1 23 803 825 803 825 0.98
14 20 1.3e-05 0.00082 20.7 4.9 1 23 831 853 831 853 0.96
15 20 3.9e-05 0.0025 19.2 7.1 1 23 859 881 859 881 0.97
16 20 5.4e-06 0.00035 21.9 6.0 1 23 887 909 887 909 0.98
17 20 0.00024 0.015 16.7 10.0 1 23 915 937 915 937 0.97
18 20 2.4e-06 0.00015 23.0 4.0 1 23 943 965 943 965 0.97
19 20 0.0013 0.082 14.4 0.3 1 23 972 994 972 994 0.96
20 20 0.069 4.4 9.0 6.2 1 23 1004 1026 1004 1026 0.99

Sequence Information

Coding Sequence
ATGAATACGGAGCATCACAATATCAATACGGGTGGCGGCCAGCCCCCTGGAAATTCAGAGcagcagcagcagacTGCGAATTTGACCCCTACGACGTCCGCTACCGACCTGCGAGTGAACTCGGCGGCAGTAAACGTCGCTTTGTCTAGCGTCGCAAAGTACTGGGTGTTTACAAATCTGTTCCCGGGACCGATACCGCAAGTGTCGGTGTACGGTCTGCCCACGGGTACCAGGATAGAAAATGGGAAACCAGTGCAGgACCTTGGTCAAGCCCATGCAAGCATACTCAATGGAGACCCCAACATTATACTTGGGCATCCGGGACAGACCCAAGTTACTGTCTCGGCTGCGCAACAGTTACCACAGATCATTGCCACTCAGACACAAACACACGATGCCCTGGCCCATGCTCAGCAACAAGAGCTGTCCCAGCAGCAGGCCGCTGGTCAGGTCACAACTAACTCGGGTCAAACCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGggGCATCACTCGCAGCAACACATAATGCAACAGCAGCTAATGGCAGCGACAAGGCCAGAACACTCCAACCAGCAGATCCAGCTAACAGTGAGTGAAGACGGTATCGTCACCGTGGTAGACCCGGGCGGAGGCAAGCTGGTGGACAAGGAGGAGTTGCATGAAGCTATCAAGATGCCGTCAGACCAGCACACACTCACTGTGCACCAGCTGCAGCAGATTGTGGGGCAACAGCAACTAACAGTGAGTGAAGACATCGTCACCGTGGTAGACCCGGGCGGAGGCAAGCTGGGGAACAAGGAGGAGCTGCATGAAGCTATCAAGATGCTGTCAGACCAGCACACACTCACTGTGCACCAGCTGCAGCAGATTGTGGGGCAACAGGTATTAGAGAACGTGGTTCGCATCGAGCAAGCTACGGGCGAGCCGGCGAATATTCTCGTAACACAGAACCCGGACGGCACCACGTCCATAGAAGCCAGCGCCGCCGACCCCCTGGCCATAGTCAAAGACGAGAAGGGCGGATCCAAGATAGAGACGGCCCACTTCGCGCTGCCTGCTGAGATAAAGGACCTTAAGAGCATTGATTTAAAGAGTGTGGGTGCAATGGGTATGGAAGGAGCCGTAGTGAAGATATCCGCGGGGGCGGCGGACCACGACATGCATGCCATGTACAAAGTCAACGTGGAAGACCTGTCGCAGCTGCTTGCTTACCATGAGGTCTTTGGGAAACTTAACGCTGACGGGCAACCACAAGCCAAAGTAATAAGCGAAGTGGAAGTAGAAGCGGGAACCAGCGCCGCCATGTCCGCCGAGGAGAACTCGCCCGGACACCATGCCTGTGATATTTGTGGGAAGATATTCCAGTTCCGATATCAACTCATTGTTCACAGacGATATCATGGCGAAAGAAAACCTTTCACGTGTCAAGTATGTGGATCCGCCTTCGCTAACCCCGTGGAGCTGTCAAGGCACGGGAAATGCCATCTTGCAGGCGACACAGCGGACAGGAACGCCAAGCGGCTGACGCAGGACAAGCCGTACGCGTGCACGACTTGCCATAAAACGTTCGCGCGCAAGGAGCACCTCGACAACCACGTCCGCAGCCACACTGGGGAGACGCCCTACAGATGTCAATTCTGCGCGAAGACTTTCACCCGGAAAGAGCATATGGTGAACCACGTCCGCAAACACACGGGGGAGACTCCGCACCGCTGCGACATATGCAAGAAGAGCTTCACTAGGAAGGAGCACTTTATGAACCACGTCATGTGGCATACAGGTGAAACTCCACACCATTGTCAAATATGCGGGAAGAAGTATACTAGGAAGGAGCACTTAGCAAACCATATGAGATCACATACGAACGATACCCCGTTCCGCTGCGAACTCTGTGGGAAATCTTTCACAAGAAAGGAACACTTCACCAATCACATACTGTGGCATACCGGCGAAACCCCCCACCGCTGCGACTTTTGCTCGAAAACGTTCACCCGCAAGGAGCATTTACTGAACCACGTCCGGCAACACACAGGCGAGTCTCCGCACCGCTGCAACTACTGCTCCAAGTCGTTCACGCGGCGGGAGCATCTGGTCAACCACGTGCGCCAGCACACCGGAGAAACGCCCTTCCAGTGCGGGTACTGCCCCAAGGCCTTCACGAGGAAGGATCACCTAGTAAACCATGTGCGACAGCACACCGGCGAGTCCCCTCACAAGTGCTCGTTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGGCAGCACACGGGCGAgtcgccgcaccgctgcacctACTGCGCCAAGTCATTCACCAGGAAGGAGCATCTCAACAACCATGTCAGACAGCACACGGGGGAAACTCCGCACAAGTGCACGTTCTGCCCGAAGGCGTACTCGCGCAAGGAGCACCTCAACAACCACATCCGGCAGCACACCGGCGACGCGCCGCACGCCTGCTCCTACTGCAACAAGAGCTTCTCCAGGAAGGAGCATCTTGTCAATCATGTCCGGCAACACACGGGCGAGACGCCGTTCAAGTGCACGTACTGCTCGAAGTCGTTCTCGCGCAAGGAGCACCTCACGAACCATGTGCACCTGCACACCGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAGACCTTTAGCCGCAAGGAACACCTCACCAACCATGTCAGGATACACACGGGCGAGTCGCCTCACCGATGCGAGTTCTGCCACAAGACGTTCACGCGGAAGGAACACCTGACCAACCACCTGAAGCAGCACACGGGCGACACGCCGCACTCCTGCAAGGTGTGCTCCAAGGCGTTCACTCGCAAGGAACATCTGGTGGCTCACATGAGATCACACAGCTGTGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCTCTGAAGGGTAACCTGTTGTTCCACGAGCGCTCGCACAACAAGAACGGCAACGGCGCCCGGCCCTTCCGATGCGACATCTGCTCCAAGGACTTCATGTGCAAAGGTCACCTGTCGTCGCACCGGCGCACGCATGCGGGTGCGGGTGCGacagcgggcgcggcggcggaggGCGCGGCCGAGCCGGCGCCCGAGTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACGCGCAGGAGCCCGAGCGGGGACACGACTCCAGACCTTCAGCAAACGCGAGTCCGGCGGAGAGCGCCGTAGCACAAAACCCCCAACAAGCTAACGCGACTGTGATGCAAATTACCAGCCAACAAGTCCGAGCGCCGGGCGGCGTCGGGCTGGAGGCGGCGGGAGCCACGTTCGCGCACCCCGTCACCGTCAACTACTAA
Protein Sequence
MNTEHHNINTGGGQPPGNSEQQQQTANLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHPGQTQVTVSAAQQLPQIIATQTQTHDALAHAQQQELSQQQAAGQVTTNSGQTHQQVPNNRVEFVHHNIDMGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPSDQHTLTVHQLQQIVGQQQLTVSEDIVTVVDPGGGKLGNKEELHEAIKMLSDQHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAIVKDEKGGSKIETAHFALPAEIKDLKSIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVISEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDTADRNAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHACSYCNKSFSRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHSCKVCSKAFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGNGARPFRCDICSKDFMCKGHLSSHRRTHAGAGATAGAAAEGAAEPAPECGDCGVKCEKDAQEPERGHDSRPSANASPAESAVAQNPQQANATVMQITSQQVRAPGGVGLEAAGATFAHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00289860;
90% Identity
-
80% Identity
-