Basic Information

Insect: Lathronympha strigana
Gene Symbol: -
Assembly: GCA_949128165.1
Location: OX421910.1:8052388-8081571[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00013 0.011 17.4 1.5 1 23 404 426 404 426 0.96

2 20 0.0062 0.54 12.1 0.6 1 20 432 451 432 454 0.94

3 20 4.4e-05 0.0039 18.8 4.6 1 23 473 495 473 495 0.98

4 20 0.00028 0.024 16.3 4.7 1 23 501 523 501 523 0.99

5 20 5.5e-05 0.0048 18.5 5.3 1 23 529 551 529 551 0.97

6 20 1.2e-05 0.001 20.6 7.1 1 23 557 579 557 579 0.97

7 20 1.1e-06 9.3e-05 23.9 2.9 1 23 585 607 585 607 0.97

8 20 0.00015 0.013 17.2 6.7 1 23 613 635 613 635 0.97

9 20 2.9e-05 0.0025 19.4 6.4 1 23 641 663 641 663 0.98

10 20 7.2e-07 6.3e-05 24.5 1.9 1 23 669 691 669 691 0.98

11 20 7.3e-05 0.0065 18.1 7.9 1 23 697 719 697 719 0.98

12 20 3.7e-05 0.0033 19.1 6.4 1 23 725 747 725 747 0.98

13 20 1.9e-05 0.0017 20.0 5.4 1 23 753 775 753 775 0.98

14 20 7e-06 0.00061 21.4 6.0 1 23 781 803 781 803 0.97

15 20 3.2e-05 0.0029 19.3 7.1 1 23 809 831 809 831 0.97

16 20 4.5e-06 0.0004 22.0 6.0 1 23 837 859 837 859 0.98

17 20 0.0002 0.018 16.8 10.0 1 23 865 887 865 887 0.97

18 20 2e-06 0.00017 23.1 4.0 1 23 893 915 893 915 0.97

19 20 0.0011 0.095 14.5 0.3 1 23 922 944 922 944 0.96

20 20 0.058 5.1 9.0 6.2 1 23 954 976 954 976 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00013	0.011	17.4	1.5	1	23	404	426	404	426	0.96
2	20	0.0062	0.54	12.1	0.6	1	20	432	451	432	454	0.94
3	20	4.4e-05	0.0039	18.8	4.6	1	23	473	495	473	495	0.98
4	20	0.00028	0.024	16.3	4.7	1	23	501	523	501	523	0.99
5	20	5.5e-05	0.0048	18.5	5.3	1	23	529	551	529	551	0.97
6	20	1.2e-05	0.001	20.6	7.1	1	23	557	579	557	579	0.97
7	20	1.1e-06	9.3e-05	23.9	2.9	1	23	585	607	585	607	0.97
8	20	0.00015	0.013	17.2	6.7	1	23	613	635	613	635	0.97
9	20	2.9e-05	0.0025	19.4	6.4	1	23	641	663	641	663	0.98
10	20	7.2e-07	6.3e-05	24.5	1.9	1	23	669	691	669	691	0.98
11	20	7.3e-05	0.0065	18.1	7.9	1	23	697	719	697	719	0.98
12	20	3.7e-05	0.0033	19.1	6.4	1	23	725	747	725	747	0.98
13	20	1.9e-05	0.0017	20.0	5.4	1	23	753	775	753	775	0.98
14	20	7e-06	0.00061	21.4	6.0	1	23	781	803	781	803	0.97
15	20	3.2e-05	0.0029	19.3	7.1	1	23	809	831	809	831	0.97
16	20	4.5e-06	0.0004	22.0	6.0	1	23	837	859	837	859	0.98
17	20	0.0002	0.018	16.8	10.0	1	23	865	887	865	887	0.97
18	20	2e-06	0.00017	23.1	4.0	1	23	893	915	893	915	0.97
19	20	0.0011	0.095	14.5	0.3	1	23	922	944	922	944	0.96
20	20	0.058	5.1	9.0	6.2	1	23	954	976	954	976	0.99

Sequence Information

Coding Sequence: ATGAATACGGAGCATCACAATATCAACACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGcagcagcagcagacTGCGAATTTGACCCCTACGACGTCCGCTACCGACCTACGAGTCAACTCAGCGGCAGTAAACGTCGCTTTGTCTAGCGTCGCGAAGTACTGGGTGTTTACAAATCTCTTCCCGGGACCAATACCGCAAGTGTCGGTGTACGGGCTGCCCACGAGTACGAGGATAGAAAATGGGAAACCAGTGCAGGACCTTGGTCAAACCCATGCAAGTATACTTAATGGAGACCCAAACATTATACTTGGACATCCGGGACAGACCCAAGTTACTGTCTCGGCTGCGCAACAGTTACCACAAATCATTGCCACACAGAcacaaactcatgATGCCCTAGCCCACGCTCAGCAACAAGAGCTATCCCAGCAGGCTGGCCAGGTGACAACCAACACGGGTCAAACCCACCAGGTACCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGGTAAATCATGTGggaCATCACTCGCAGCAACATATAATGCAGCAGCAGTTAATGGCAGCAACAAGACCAGATCACTCCAACCAGCAgATCCAGCTAACAGTGAGTGAAGATGGCATTGTCACTGTGGTAGACCCCAGCGGAGGCAAGCTAGTTGATAAGGAAGAGCTCCATGAAACGATAAAGATGCCGACAGACCACACGCTCACTGTGCATCAACTGCAGCAGATAGTGGGCCAACAGGTGTTAGAGAACGTGGTTCGCATCGAGCAAGCCACCGGCGAGCCGGCCAACATCCTCGTCACGCAGAACCCCGACGGAACCACCTCCATAGAAGCCAGCGCCGCAGACCCTCTGTCTATAGTCAAAGACGAAAAGGGTGGAGCGAAGATAGAGACCGCCCACTTCGCGCTGCCTGCTGAGATCAAGGATCTTAAGAGCATTGATTTAAAGAGTGTTGGAGCAATGGGTATGGAGGGAGCCGTAGTGAAGATATCCGCGGGAGCTGCAGACCACGACATGCACGCCATGTACAAAGTCAACGTCGAGGACCTCTCGCAGCTGCTGGCCTACCACGAAGTCTTCGGCAAACTTAACGCTGATGGACAGACTCAAGCCAAAGTGATAAGTGAAGTGGAGGTAGAAGCGGGCACCAGCGCCGCTATGTCCGCCGAGGAGAACTCGCCCGGACACCACGCCTGTGATATTTGTGGGAAGATATTCCAGTTCCGGTACCAGCTCATTGTTCATAGACGATATCACGGCGAAAGGAAACCTTTCACGTGTCAAGTATGTGGATCAGCCTTCGCCAATCCTGTGGAGCTGTCGAGGCACGGGAAATGCCATCTTGCGGGCGAGCCAGCCGACAGGAACGCCAAGCGGCTGACGCAGGACAAGCCGTACGCGTGCACCACCTGCCACAAGACGTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACCGGGGAGACGCCGTATAGATGTCAATTCTGCGCAAAGACGTTTACCCGGAAAGAGCACATGGTGAACCACGTGCGCAAGCACACGGGCGAGACTCCGCACCGGTGCGACATCTGCAAGAAGAGCTTCACGAGGAAGGAGCACTTCATGAACCACGTCATGTGGCACACAGGTGAAACTCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGCGAACCATATGAGGTCACATACGAATGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACAAGAAAGGAACACTTCACCAATCACATACTGTGGCATACTGGTGAAACACCCCACCGTTGTGACTTCTGCTCCAAAACATTCACCCGCAAAGAGCATTTACTGAACCATGTCCGGCAACACACGGGCGAGTCTCCGCACCGCTGCAACTACTGCTCCAAGTCCTTCACGCGGCGGGAGCACCTCGTCAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGATACTGTCCCAAGGCCTTCACGAGGAAGGATCACCTAgTAAACCACGTGCGGCAGCATACGGGCGAGTCGCCGCACAAGTGCTCGTTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGCCAGCACACCGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCGTTCACCAGGAAGGAGCATCTCAACAACCATGTCAGACAGCACACGGGGGAGACTCCGCACAAGTGCACGTTCTGCCCGAAGGCGTACTCCCGCAAGGAGCACCTCAACAACCACATCCGCCAGCACACCGGCGACGCTCCGCACTCCTGCTCCTACTGCCAAAAGAGCTTCTCCAGGAAGGAGCATCTCGTCAACCATATCCGACAACACACTGGCGAGACTCCGTTCAAGTGCACGTACTGCTCGAAGTCGTTCTCTCGCAAAGAGCACCTCACCAACCACGTGCACCTCCACACCGGCGAGACGCCGCACAAGTGTCCGTTCTGCACCAAGACCTTCTCGCGAAAGGAACACCTTACCAACCACGTCAGGATACACACGGGCGAGTCCCCTCACCGGTGCGAGTTCTGCCATAAAACGTTCACACGGAAAGAGCACCTGACGAACCATCTGAAGCAGCACACGGGCGACACGCCGCACTCCTGCAAAGTCTGCTCCAAGGCCTTCACTCGCAAGGAACATCTGGTGGCCCATATGAGatcTCACAGTTGCGGCGAGCGGCCGTTTAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCACACAACAAGAACGGTGGCGGCGCCCGGCCCTTCCGCTGCGACATCTGCTCCAAAGACTTCATGTGCAAAGGGCACCTGTCGTCGCACCGGCGCACGCACGGCGCGGCGGGCGAGGCGGAGGCGGAGGcggaggcgggcgcgggcgcgggcgacGCGCCGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGACAACGCCGAGCCCGAGCGGAAACTGGAGCCCAGgCCTGCAGAGAACTCGAGTCCAACGGAAAACGTAGTAGCACAAAACCCCCAAGCAACTGTGATGCAGATTACCAGTCAACAAGTCCGCGCGCCGGCCGGCGTGGCCCTGGACGCGGCGGGCGCCACGTTCGCGCACCCCGTCACCGTCAACTACTAG
Protein Sequence: MNTEHHNINTGGGQPPGNSEQQQQTANLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSTRIENGKPVQDLGQTHASILNGDPNIILGHPGQTQVTVSAAQQLPQIIATQTQTHDALAHAQQQELSQQAGQVTTNTGQTHQVPNNRVEFVHHNIDMVNHVGHHSQQHIMQQQLMAATRPDHSNQQIQLTVSEDGIVTVVDPSGGKLVDKEELHETIKMPTDHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLSIVKDEKGGAKIETAHFALPAEIKDLKSIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQTQAKVISEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGEPADRNAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCSYCQKSFSRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHSCKVCSKAFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGGGARPFRCDICSKDFMCKGHLSSHRRTHGAAGEAEAEAEAGAGAGDAPDCGDCGVKCEKDNAEPERKLEPRPAENSSPTENVVAQNPQATVMQITSQQVRAPAGVALDAAGATFAHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -