Basic Information

Insect: Polylopha cassiicola
Gene Symbol: -
Assembly: GCA_038024825.1
Location: CP149054.1:4477569-4490520[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0001 0.0057 17.4 2.2 1 23 427 449 427 449 0.97

2 20 0.0052 0.3 12.0 0.6 1 20 455 474 455 477 0.94

3 20 3.7e-05 0.0021 18.8 4.6 1 23 496 518 496 518 0.98

4 20 0.00023 0.013 16.3 4.7 1 23 524 546 524 546 0.99

5 20 4.6e-05 0.0026 18.5 5.3 1 23 552 574 552 574 0.97

6 20 2.5e-05 0.0014 19.3 7.4 1 23 580 602 580 602 0.97

7 20 8.9e-07 5.1e-05 23.9 2.9 1 23 608 630 608 630 0.97

8 20 0.00013 0.0072 17.1 6.7 1 23 636 658 636 658 0.97

9 20 2.4e-05 0.0014 19.4 6.4 1 23 664 686 664 686 0.98

10 20 6.1e-07 3.4e-05 24.4 1.9 1 23 692 714 692 714 0.98

11 20 6.2e-05 0.0035 18.1 7.9 1 23 720 742 720 742 0.98

12 20 3.1e-05 0.0018 19.0 6.4 1 23 748 770 748 770 0.98

13 20 1.6e-05 0.00093 19.9 5.4 1 23 776 798 776 798 0.98

14 20 8e-06 0.00046 20.9 5.9 1 23 804 826 804 826 0.97

15 20 2.7e-05 0.0016 19.2 7.1 1 23 832 854 832 854 0.97

16 20 3.8e-06 0.00022 21.9 6.0 1 23 860 882 860 882 0.98

17 20 0.00017 0.0096 16.7 10.0 1 23 888 910 888 910 0.97

18 20 1.3e-06 7.3e-05 23.4 4.0 1 23 916 938 916 938 0.96

19 20 0.0015 0.083 13.8 0.9 1 23 945 967 945 967 0.96

20 20 0.022 1.3 10.1 5.2 1 23 977 999 977 999 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0001	0.0057	17.4	2.2	1	23	427	449	427	449	0.97
2	20	0.0052	0.3	12.0	0.6	1	20	455	474	455	477	0.94
3	20	3.7e-05	0.0021	18.8	4.6	1	23	496	518	496	518	0.98
4	20	0.00023	0.013	16.3	4.7	1	23	524	546	524	546	0.99
5	20	4.6e-05	0.0026	18.5	5.3	1	23	552	574	552	574	0.97
6	20	2.5e-05	0.0014	19.3	7.4	1	23	580	602	580	602	0.97
7	20	8.9e-07	5.1e-05	23.9	2.9	1	23	608	630	608	630	0.97
8	20	0.00013	0.0072	17.1	6.7	1	23	636	658	636	658	0.97
9	20	2.4e-05	0.0014	19.4	6.4	1	23	664	686	664	686	0.98
10	20	6.1e-07	3.4e-05	24.4	1.9	1	23	692	714	692	714	0.98
11	20	6.2e-05	0.0035	18.1	7.9	1	23	720	742	720	742	0.98
12	20	3.1e-05	0.0018	19.0	6.4	1	23	748	770	748	770	0.98
13	20	1.6e-05	0.00093	19.9	5.4	1	23	776	798	776	798	0.98
14	20	8e-06	0.00046	20.9	5.9	1	23	804	826	804	826	0.97
15	20	2.7e-05	0.0016	19.2	7.1	1	23	832	854	832	854	0.97
16	20	3.8e-06	0.00022	21.9	6.0	1	23	860	882	860	882	0.98
17	20	0.00017	0.0096	16.7	10.0	1	23	888	910	888	910	0.97
18	20	1.3e-06	7.3e-05	23.4	4.0	1	23	916	938	916	938	0.96
19	20	0.0015	0.083	13.8	0.9	1	23	945	967	945	967	0.96
20	20	0.022	1.3	10.1	5.2	1	23	977	999	977	999	0.99

Sequence Information

Coding Sequence: ATGAATCCTGAGCACCATAACATCAACACGGGTGGCGGCCAGCCCCCTGGAAATTCAGAGTCTCAGACACAAAGAGTTCAATCTGCTCAACAGCAACAGCAGCAATCGAGCAGTCTGACGCCGACAACGTCCGCTACCGACCTTCGAGTCAACTCCGCGGCTGTAAACGTTGCCTTGTCAAGCGTCGCAAAGTACTGGGTGTTTACAAATTTGTTCCCCGGGCCTATTCCTCAAGTTTCCGTGTACGGTTTACCAACCGGTACGAGAATAGAAAATGGGAAACCAGTgcagGACCTTGGTCAAGCCCATGCTAGCATACTTAACGGCGACCCCAACATCATTCTCGGACATCACACTGGACAGCCTCAAGTTACAGTCTCAGCTGCGCAACAAATACCTGTGTCACAAATCATAGCTACACAGACGGCTCAGCCACATGatGCACTGGCTCATGCTCAGCAACAAGAGCTGGCATCCCAGCAAGGGACCAGTGGCACGTCTCAGGTCACTGCCAGCACGGGTCAGACTACCCACCAGCAGGTACCCAATAACCGGGTCGAATTTGTACAACACCATAACATTGATATGGTAAATCATGTGAGTCATCATACACAACAACATATCATGCAACAACAGTTAATGGCAGCGACCCGGCCGGAGCATGCCAACCAAcagATCCAACTGACAGTGAGTGAAGATGGTATAGTGACGGTAGTGGATCCGGGTGGTAGCAAGCTCGTGGACAAGGAAGACCTCCATGACGCCATCAAAATGCCTGGAGACCACACCCTCACAGTACACCAGTTGCAACAGATTGTTGGACAACAGGTTCTAGACAGTGTGGTTCGCATAGAGCAAGCTACTGGTGAGCCAGCCAACATCCTTGTGACCCACAACCCTGATGGCACTACGTCCATCGAAGCCAGCGCGGCTGACCCCCTGGCCGTGGTGAAAGACGAAAAAGCAGCTGGAAAGATAGAAACTGCACAGTTTGCTCTACCAGCCGAAATTAAGGACCTTAAGGGCATTGATTTAAAGAGCGTAGGAGCGATGGGTATGGAGGGAGCCGTAGTGAAAATATCAGCGGGTGCCTCGGAACACGATATGCACGCGATGTATAAAGTCAATGTAGAAGATCTCTCGCAACTTTTAGCATATCATGAAGTGTTTGGCAAACTCAACGCGGAGGGACAGCCACAAGCCAAGGTGATTGGTGAAGTGGAGGTGGAAGCTGGCACAAGTGCGGCCATGTCTGAGGCGGAGTCGTCACCGGGACACCACTCTTGTGATATATGCGGGAAAATATTCCAATTCAGATACCAACTCATTGTTCATAGgcgCTATCACGGCGAACGTAAACCATTCACGTGTCAGGTGTGTGGTTCCGCTTTCGCCAATCCTGTTGAGCTATCTCGCCATGGCAAATGCCATCTTGCTGGGGACCCAGCTGACAGACAAGCGAAGCGGTTAACACAAGACAAGCCCTACGCGTGCACGACTTGCCATAAAACGTTCGCTCGCAAGGAACACCTCGACAACCATGTTCGCAGCCACACTGGAGAGACTCCATATAGATGTCAATTCTGCGCGAAAACTTTCACGCGCAAGGAGCACATGGTGAACCACGTCCGCAAGCACACCGGCGAGACGCCGCACCGCTGCGACATCTGCAAGAAGAGCTTCACGAGGAAAGAACACTTCATGAACCACGTCATGTGGCACACagGTGAAACACCACACCATTGTCGAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCGAACCATATGAGATCACATACAAATGATACACCGTTCCGCTGCGAACTGTGTGGAAAGTCTTTCACGAGAAAAGAACACTTCACCAATCACATATTGTGGCATACTGGTGAAACCCCCCACCGTTGCGACTTCTGCTCTAAGACCTTCACGCGGAAGGAGCATCTGTTGAACCACGTCCGGCAGCACACGGGCGAGTCGCCGCACCGGTGTAACTACTGCTCCAAGTCGTTCACGAGGCGGGAGCATCTCGTCAACCACGTGCGCCAACACACCGGGGAGACGCCGTTCCAGTGCGGATACTGTCCGAAGGCTTTCACGAGGAAGGACCACCTAGTGAATCACGTACGCCAGCACACGGGCGAGTCGCCGCACAAGTGCTCGTTCTGCACGAAGTCGTTTACCCGCAAGGAGCATCTGACCAATCACGTGCGCCAGCACACCGGGGAATCGCCCCacagatgtacttactgcgcAAAATCGTTTACCAGAAAAGAACATCTCAACAATCATGTCAGACAGCACACTGGCGAGACTCCACACAAATGCACGTTCTGCCCTAAGGCGTACTCCCGGAAGGAGCATCTGAACAATCATATACGGCAGCACACTGGCGACGCGCCGCACTCCTGCTCGTATTGCAGCAAGAGTTTCTCTAGAAAGGAACACCTTGTCAATCATATACGGCAACACACTGGCGAGACACCATTCAAATGCACGTATTGTTCCAAGTCGTTCTCTCGCAAAGAACATCTCACCAACCACGTCCATTTGCATACGGGCGAAACGCCCCACAAGTGTCCCTTCTGTACCAAGACATTCTCGAGGAAGGAACATTTGACTAATCATGTCAGGATACACACTGGAGAGTCTCCACACCGCTGCGAATTCTGTCACAAGACGTTTACGCGCAAAGAACACCTGACGAACCATCTGAAGCAACACACGGGAGACACGCCTCACGCCTGCAAAGTGTGCTCTAAATCGTTCACTCGCAAGGAGCATCTTGTTGCGCATAtgagGTCGCACAGTTGTGGTGAACGACCGCACACCTGCGGCGAGTGTGGGAAATCATTCCCGCTCAAAGGCAATTTACTGTTCCACGAGCGATCCCACAACAAGGCTGGCGGAGGTGCGAGGCCCTTCCGATGTGATATATGCTCGAAGGACTTTATGTGTAaagGTCATTTAGCATCGCATCGTCGCACTCACGCCGAAGCCACGGAAGGCGCCGCGGCGACCGACGCGCCCGCGGAAGACTGCGGCGACTGCACCAAATGCGAAAAGGAAGAACCGCAAACTGAAAGAAAACACgatattagGAGTTCTACTGAAAACAGACAAGTGGAAAGTGTAGTGGCCGCGAATCCACAAACAAACACTACTGTGATGCAAATTACAAGCCAGCAAGTGCGACCGGTCGCTGCGACGAGCGGCGGCGCGACCGGCGTGACGAGCGCCACCTTCACGCCGCAACACCACGCCGGCGCGGCCATCGCACACCACCCCGTCACAGTAAACTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGNSESQTQRVQSAQQQQQQSSSLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHHTGQPQVTVSAAQQIPVSQIIATQTAQPHDALAHAQQQELASQQGTSGTSQVTASTGQTTHQQVPNNRVEFVQHHNIDMVNHVSHHTQQHIMQQQLMAATRPEHANQQIQLTVSEDGIVTVVDPGGSKLVDKEDLHDAIKMPGDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLAVVKDEKAAGKIETAQFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGASEHDMHAMYKVNVEDLSQLLAYHEVFGKLNAEGQPQAKVIGEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDPADRQAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCRICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCSYCSKSFSRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHACKVCSKSFTRKEHLVAHMRSHSCGERPHTCGECGKSFPLKGNLLFHERSHNKAGGGARPFRCDICSKDFMCKGHLASHRRTHAEATEGAAATDAPAEDCGDCTKCEKEEPQTERKHDIRSSTENRQVESVVAANPQTNTTVMQITSQQVRPVAATSGGATGVTSATFTPQHHAGAAIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -