Basic Information

Insect: Pandemis heparana
Gene Symbol: -
Assembly: GCA_963854515.1
Location: OY978013.1:5910700-5928635[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 9.4e-05 0.0062 17.6 1.5 1 23 238 260 238 260 0.96

2 20 0.0045 0.3 12.3 0.6 1 20 266 285 266 288 0.94

3 20 3.2e-05 0.0021 19.1 4.6 1 23 307 329 307 329 0.98

4 20 0.0002 0.013 16.6 4.7 1 23 335 357 335 357 0.99

5 20 4e-05 0.0027 18.8 5.3 1 23 363 385 363 385 0.97

6 20 8.7e-06 0.00057 20.9 7.1 1 23 391 413 391 413 0.97

7 20 7.8e-07 5.1e-05 24.2 2.9 1 23 419 441 419 441 0.97

8 20 0.00011 0.0073 17.4 6.7 1 23 447 469 447 469 0.97

9 20 2.1e-05 0.0014 19.7 6.4 1 23 475 497 475 497 0.98

10 20 5.3e-07 3.5e-05 24.7 1.9 1 23 503 525 503 525 0.98

11 20 5.4e-05 0.0036 18.4 7.9 1 23 531 553 531 553 0.98

12 20 2.7e-05 0.0018 19.3 6.4 1 23 559 581 559 581 0.98

13 20 1.4e-05 0.00094 20.2 5.4 1 23 587 609 587 609 0.98

14 20 8.7e-06 0.00057 20.9 6.0 1 23 615 637 615 637 0.97

15 20 2.4e-05 0.0016 19.5 7.1 1 23 643 665 643 665 0.97

16 20 3.3e-06 0.00022 22.2 6.0 1 23 671 693 671 693 0.98

17 20 0.00015 0.0098 17.0 10.0 1 23 699 721 699 721 0.97

18 20 1.8e-06 0.00012 23.1 3.0 1 23 727 749 727 749 0.96

19 20 0.00079 0.052 14.7 0.3 1 23 756 778 756 778 0.96

20 20 0.019 1.3 10.4 5.2 1 23 788 810 788 810 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	9.4e-05	0.0062	17.6	1.5	1	23	238	260	238	260	0.96
2	20	0.0045	0.3	12.3	0.6	1	20	266	285	266	288	0.94
3	20	3.2e-05	0.0021	19.1	4.6	1	23	307	329	307	329	0.98
4	20	0.0002	0.013	16.6	4.7	1	23	335	357	335	357	0.99
5	20	4e-05	0.0027	18.8	5.3	1	23	363	385	363	385	0.97
6	20	8.7e-06	0.00057	20.9	7.1	1	23	391	413	391	413	0.97
7	20	7.8e-07	5.1e-05	24.2	2.9	1	23	419	441	419	441	0.97
8	20	0.00011	0.0073	17.4	6.7	1	23	447	469	447	469	0.97
9	20	2.1e-05	0.0014	19.7	6.4	1	23	475	497	475	497	0.98
10	20	5.3e-07	3.5e-05	24.7	1.9	1	23	503	525	503	525	0.98
11	20	5.4e-05	0.0036	18.4	7.9	1	23	531	553	531	553	0.98
12	20	2.7e-05	0.0018	19.3	6.4	1	23	559	581	559	581	0.98
13	20	1.4e-05	0.00094	20.2	5.4	1	23	587	609	587	609	0.98
14	20	8.7e-06	0.00057	20.9	6.0	1	23	615	637	615	637	0.97
15	20	2.4e-05	0.0016	19.5	7.1	1	23	643	665	643	665	0.97
16	20	3.3e-06	0.00022	22.2	6.0	1	23	671	693	671	693	0.98
17	20	0.00015	0.0098	17.0	10.0	1	23	699	721	699	721	0.97
18	20	1.8e-06	0.00012	23.1	3.0	1	23	727	749	727	749	0.96
19	20	0.00079	0.052	14.7	0.3	1	23	756	778	756	778	0.96
20	20	0.019	1.3	10.4	5.2	1	23	788	810	788	810	0.99

Sequence Information

Coding Sequence: ATGGTTGCTTCACGGTTTTTGTCCTTTATTCAGAGGCTATACTTGTGCCTAGCGCTTTTCATCAACGGCTCCTTCAGTGATGCTTGTATCACTAAGGAAAGATTCCCAATCCAGTTGACTGTTAGCGAGGACGGCATCGTTACGGTGGTGGACCCGGGAGGGGGTAAACTTGTGGACAAAGAAGAACTGCATGAAGCTATCAAGATGCCTGCAGACCACACCCTTACTGTGCACCAGTTACAACAAATCGTTGGGCAACAGGTGTTAGAAAACGTGGTTCGCATCGAGCAAGCGACCGGCGAGCCGGCGAACATTCTAGTGACACAGAACCCGGACGGAACGACGTCCATCGAAGCCAGCGCGGCCGACCCGCTCGCCATCGTGAAAGACGAGAAGAGCGGCTCCAAGATTGAGACGGCGCATTTCGCGCTGCCCGCCGAAATAAAAGACCTCAAGGGCATTGATTTGAAGAGTGTAGGAGCGATGGGGATGGAAGGTGCGGTGGTAAAGATATCAGCTGGTGCTTCCGACCATGATATGCATGCCATGTACAAAGTTAACGTAGAGGATCTGTCGCAGCTACTGGCTTACCACGAAGTTTTTGGCAAACTCAATGCCGACGGCCAGCCACAAGCTAaaGTGATAGGCGAAGTGGAAGTAGAAGCGGGAACGAGCGCTGGCATGTCGGCGGAGGAGTCCTCGCCCGGCCACCACGCATGTGATATTTGCGGGAAGATATTCCAGTTCCGATATCAACTTATTGTTCATAGGCGATACCATGGTGAGCGGAAACCCTTCACGTGTCAAGTTTGCGGATCAGCCTTCGCGAATCCTGTTGAACTATCACGACACGGAAAATGTCATCTTGCTGGCGATTCAGCCGATAGGACGGCCAAAAGGTTGACCCAGGACAAGCCTTATGCCTGCACGACTTGCCATAAAACGTTCGCGCGAAAGGAACACCTCGACAACCACGTTCGAAGTCACACCGGAGAGACGCCCTATAGGTGTCAATTTTGCGCCAAAACGTTTACGCGCAAAGAGCACATGGTCAACCACGTCCGCAAACACACTGGCGAGACCCCGCACCGCTGTGACATCTGCAAGAAGAGCTTCACCAGGAAGGAACACTTTATGAACCATGTCATGTGGCACACGGGTGAGACTCCACATCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCCAACCATATGCGATCCCATACAAACGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACATTTCACCAATCACATATTGTGGCATACTGGTGAAACGCCGCACCGCTGCGACTTCTGCTCCAAAACGTTCACGCGCAAGGAGCACCTGCTCAACCACGTGCGGCAACACACGGGGGAGTCGCCCCACCGCTGCAACTACTGTTCCAAGTCGTTCACGCGCCGCGAACACCTCGTCAACCACGTGCGGCAGCACACGGGCGAGACGCCCTTCCAGTGCGGGTACTGCCCGAAGGCGTTCACGAGGAAGGACCATCTAGTGAACCATGTCCGGCAGCACACGGGCGAGTCCCCGCACAAGTGTTCGTTCTGCACGAAGTCGTTCACGCGCAAGGAGCACCTGACTAACCACGTGCGCCAGCACACGGGCGAGTCGCCCCACAGGTGCACATACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCACGTCAGACAGCACACTGGCGAAACTCCGCACAAGTGCACGTTCTGCCCGAAGGCGTACTCCCGTAAGGAGCACCTCAACAACCACATCAGGCAACATACGGGCGACGCGCCGCACTCTTGTTCCTATTGCAGCAAGACTTTCTCCAGGAAGGAACATCTTGTCAATCATATCCGGCAACACACTGGCGAGACCCCGTTCAAGTGCACGTACTGTTCCAAGTCATTCTCGCGCAAGGAGCACCTCACCAACCACGTCCACCTGCACACCGGGGAGACGCCCCACAAGTGCCCGTTCTGCACCAAAACGTTCTCGCGGAAGGAGCATCTCACCAATCATGtcagAATACACACGGGAGAGTCCCCGCATCGGTGTGAATTTTGTCACAAGACTTTCACCCGGAAAGAGCACCTGACCAACCATCTGAAACAGCACACGGGAGACACGCCCCACGCTTGCAAAGTCTGCTCCAAGCCTTTCACGCGCAAGGAGCATCTTGTCGCGCATATGAGATCGCACAGTTGCGGCGAACGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACAACAAgaacggcggcggcgcgcggccctTCCGGTGCGACATATGCTCCAAGGATTTCATGTGCAAAGGTCATTTGGCGTCTCACCGGCGCACGCACAGCGAGGCGGCGGCCGAGGGCGCGGCCGACGCGGCGCCCGAGGAGGACTGCGGCGACTGCGTCAAGTGCGAGAAGGACCCGACCGACCAGCCCGAGCGGAAACACGACATCAGACCAGCAGCGGAAAGCAGGCCTGCTGAAAACGCTGTAGCACAAAATCCCCAAGCGAATGCAACTGTGATGCAAATTACCAGTCAACAGGTGCGTGCGGGCGGGGCCCAGGGCGCCGCCGCGGTCCCGAGCGCGACGTTCacggccgccgcgccgctccaCCACCCCGTCACCGTCAACTACTAA
Protein Sequence: MVASRFLSFIQRLYLCLALFINGSFSDACITKERFPIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPADHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAIVKDEKSGSKIETAHFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGASDHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAGMSAEESSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDSADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCSYCSKTFSRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGGGARPFRCDICSKDFMCKGHLASHRRTHSEAAAEGAADAAPEEDCGDCVKCEKDPTDQPERKHDIRPAAESRPAENAVAQNPQANATVMQITSQQVRAGGAQGAAAVPSATFTAAAPLHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -