Cros023154.2
Basic Information
- Insect
- Choristoneura rosaceana
- Gene Symbol
- -
- Assembly
- GCA_037349165.1
- Location
- JAZBNJ010000034.1:4165395-4184782[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00011 0.0088 17.4 1.5 1 23 408 430 408 430 0.96 2 20 0.0053 0.43 12.1 0.6 1 20 436 455 436 458 0.94 3 20 3.8e-05 0.003 18.8 4.6 1 23 477 499 477 499 0.98 4 20 0.00024 0.019 16.3 4.7 1 23 505 527 505 527 0.99 5 20 4.7e-05 0.0038 18.5 5.3 1 23 533 555 533 555 0.97 6 20 7.6e-06 0.00061 21.0 7.2 1 23 561 583 561 583 0.97 7 20 9.1e-07 7.3e-05 23.9 2.9 1 23 589 611 589 611 0.97 8 20 0.00013 0.01 17.2 6.7 1 23 617 639 617 639 0.97 9 20 2.5e-05 0.002 19.4 6.4 1 23 645 667 645 667 0.98 10 20 6.2e-07 5e-05 24.5 1.9 1 23 673 695 673 695 0.98 11 20 6.3e-05 0.0051 18.1 7.9 1 23 701 723 701 723 0.98 12 20 3.2e-05 0.0026 19.1 6.4 1 23 729 751 729 751 0.98 13 20 1.7e-05 0.0013 20.0 5.4 1 23 757 779 757 779 0.98 14 20 3.2e-06 0.00026 22.2 5.9 1 23 785 807 785 807 0.97 15 20 2.8e-05 0.0022 19.3 7.1 1 23 813 835 813 835 0.97 16 20 3.9e-06 0.00031 21.9 6.0 1 23 841 863 841 863 0.98 17 20 0.00017 0.014 16.8 10.0 1 23 869 891 869 891 0.97 18 20 2.1e-06 0.00017 22.8 3.0 1 23 897 919 897 919 0.96 19 20 0.00093 0.074 14.5 0.3 1 23 926 948 926 948 0.96 20 20 0.023 1.8 10.1 5.2 1 23 958 980 958 980 0.99
Sequence Information
- Coding Sequence
- ATGAATCCAGAGCATCACAATATCAATACGGGTGGCGGCCAGCCCCCAGGAAACTCGGAGCAGTCGCAGCAAACTACTAATGTGACCCCAACGAGTTCTGCAACGGACCTGCGAGTGAACTCTGCTGCAGTGAACGTCGCTTTGTCTAGCGTCGCGAAATATTGGGTGTTTACAAATTTGTTCCCGGGTCCCATACCGCAAGTTTCGGTTTACGGCCTTCCCACTGGAACCCGGATAGAAAATGGAAAACCAGTGCAGGATATTGGCCAAGCCCATGCAAGCATACTCAATGGAGACCCAAACATCATACTTGGACATCACACAGGACAGTCGCAAGTCACTGTCTCAGCAGCACAACAGTTACCGCAGATCATTGCTACTCAAACACAATCCCATGATTTGGCCCATGTACAGCAACAAGAGCTAGCATCTCAACAGGGCTCGGGCACAACCCAGGTCACCGTGAGCCCGGGTCAAACCACTCACCAGGTATCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGGTAAATGATGTGGATCATCATTTACAGCAACACATAATGCAACAACAGCTGATGGCCGCAACGCGCCCTGAACACTCCAATCAACAGATCCAGCTGACAGTAAGCGAGGATGGCATCGTCACAGTGGTGGACCCTGGAGGAGGAAAGCTGGTTGATAAGGAGGAATTACATGAAGCTATCAAAATGCCTTCAGACCACACCCTCACTGTGCACCAATTACAGCAAATTGTTGGGCAACAGGTGTTAGAAAACGTGGTCCGCATCGAGCAAGCGACCGGCGAGCCGGCCAATATCTTAGTAACGCAGAACCCAGACGGAACCACGTCTATCGAAGCCAGTGCGGCCGATCCACTTGCCGTCGTGAAAGACGAAAAAAGTTCCAAAATAGAGACCGCGCATTTCGCGCTGCCAGCTGAAATAAAAGACCTCAAGGGCATTGATTTGAAGAGTGTAGGAGCGATGGGGATGGAAGGAGCAGTGGTGAAGATATCAGCGGGTGCTTCCGAGCACGATATGCACGCCATGTACAAAGTCAATGTAGAGGATTTGTCACAGCTACTGGCTTACCACGAAGTCTTTGGCAAACTCAATGCCGACGGCCAGCCACAAGCTAAAGTGATAGGCGAAGTGGAAGTAGAAGCGGGAACGAGCGCGGCCATGTCGGCGGAAGAGTCCTCACCTGGTCACCATGCCTGTGATATTTGCGGGAAGATATTCCAATTCCGTTACCAACTCATTGTTCATAGacgATACCATGGCGAGCGGAAACCTTTCACGTGTCAAGTTTGTGGATCGGCCTTTGCGAATCCTGTTGAACTATCAAGACACGGCAAATGCCATCTTGCCGGTGATCCAGCCGATAGGACGGCTAAAAGATTGACCCAGGACAAACCCTATGCGTGCACGACTTGCCATAAAACGTTCGCGCGCAAAGAACACCTGGACAACCACGTACGAAGTCACACCGGAGAAACTCCATACAGGTGTCAATTTTGCGCCAAAACGTTCACGCGCAAAGAACACATGGTCAACCACGTCCGCAAACACACAGGCGAGACTCCGCACCGCTGTGACATCTGCAAGAAAAGCTTCACCAGGAAGGAACACTTTATGAACCACGTCATGTGGCACACTGGTGAAACTCCACATCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCCAACCATATGCGATCCCATACAAACGATACCCCATTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATATTGTGGCATACTGGTGAAACGCCGCATCGCTGCGACTTCTGCTCGAAAACGTTCACACGCAAGGAGCATCTACTGAACCACGTTCGACAGCACACTGGCGAGTCCCCGCATCGTTGCAACTACTGCTCGAAGTCATTCACGCGCCGCGAACATCTTGTCAATCACGTGCGGCAACACACGGGAGAAACACCCTTCCAGTGCGGATACTGCCCCAAAGCGTTCACGAGGAAAGACCATCTAGTGAACCACGTCAGACAACACACGGGCGAATCTCCTCACAAGTGCTCGTTCTGTACTAAATCCTTCACTCGCAAAGAGCACCTGACAAACCACGTAAGGCAACACACTGGAGAATCGCCTCACAGATGCACCTACTGCGCAAAGTCCTTCACGAGGAAGGAGCATCTTAATAATCACGTCAGACAGCACACGGGCGAAACTCCGCACAAATGTACGTTCTGCCCGAAGGCGTACTCTCGTAAGGAGCATCTGAACAACCACATCCGGCAACATACTGGCGACGCGCCGCACTCCTGTTCCTATTGCAACAAGAGTTTCTCCAGGAAGGAACATCTTGTCAATCATATTCGGCAACACACGGGCGAGACCCCATTCAAGTGCACGTACTGTTCCAAGTCGTTCTCGCGCAAGGAGCACCTCACGAATCACGTGCATCTGCACACCGGGGAAACGCCGCACAAATGCCCCTTTTGTACCAAAACCTTCTCTCGGAAGGAGCATCTCACTAATCACGTCAGAATACACACCGGCGAGTCCCCTCATCGATGCGAATTCTGCCACAAGACGTTCACACGGAAAGAGCACTTGACCAACCATCTCAAGCAGCACACGGGAGACACGCCCCACGCCTGCAAAGTCTGCTCTAAGCCTTTCACTCGCAAGGAGCATCTTGTTGCACATATGAGATCGCACAGTTGCGGCGAACGGCCGTTCAGTTGCGGCGAGTGCGGCAAGTCGTTCCCGTTGAAAGGCAATTTGCTGTTCCACGAGCGATCGCACAACAAAAACGGCAGCGGCGCGCGGCCCTTCCGCTGCGACATCTGCTCCAAGGATTTCATGTGCAAAGGTCATTTGGCGTCCCACCGACGCACGCACAGCGAGGCGGCGGCGGAGGGCGCGGTCGACGCGCCCGCCGAGGAGGACTGCGGCGACTGCGTCAAGTGCGAGAAGGACCCGCTGGATCAGCCCGAGCGGAAACACGATATCAGaccAGCAGCAGAAAGCAGACCTGCTGAGAACGCCGTAGCACAAAATCCCCAAGCTAATGCAACTGTGATGCAAATTACCAGTCAAGTGCGGGCTGGCGCCGCGTCGGGCGCGGCCGCGGTCCCGAGCGCCACGTTCACGGCCGCCGCGCCGCTGCACCACCCGGTCACCGTCAACTACtaa
- Protein Sequence
- MNPEHHNINTGGGQPPGNSEQSQQTTNVTPTSSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDIGQAHASILNGDPNIILGHHTGQSQVTVSAAQQLPQIIATQTQSHDLAHVQQQELASQQGSGTTQVTVSPGQTTHQVSNNRVEFVHHNIDMVNDVDHHLQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAVVKDEKSSKIETAHFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGASEHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAAMSAEESSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDPADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCSYCNKSFSRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGSGARPFRCDICSKDFMCKGHLASHRRTHSEAAAEGAVDAPAEEDCGDCVKCEKDPLDQPERKHDIRPAAESRPAENAVAQNPQANATVMQITSQVRAGAASGAAAVPSATFTAAAPLHHPVTVNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00289860;
- 90% Identity
- iTF_00680814;
- 80% Identity
- -