Basic Information

Insect: Apotomis capreana
Gene Symbol: -
Assembly: GCA_947623375.1
Location: OX392507.1:19123254-19144885[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0001 0.0092 17.4 1.5 1 23 405 427 405 427 0.96

2 20 0.0049 0.45 12.1 0.6 1 20 433 452 433 455 0.94

3 20 3.5e-05 0.0032 18.8 4.6 1 23 474 496 474 496 0.98

4 20 0.00022 0.02 16.3 4.7 1 23 502 524 502 524 0.99

5 20 4.3e-05 0.004 18.5 5.3 1 23 530 552 530 552 0.97

6 20 9.3e-06 0.00085 20.6 7.1 1 23 558 580 558 580 0.97

7 20 8.3e-07 7.6e-05 23.9 2.9 1 23 586 608 586 608 0.97

8 20 0.00012 0.011 17.2 6.7 1 23 614 636 614 636 0.97

9 20 2.3e-05 0.0021 19.4 6.4 1 23 642 664 642 664 0.98

10 20 5.7e-07 5.2e-05 24.5 1.9 1 23 670 692 670 692 0.98

11 20 5.8e-05 0.0053 18.1 7.9 1 23 698 720 698 720 0.98

12 20 2.9e-05 0.0027 19.1 6.4 1 23 726 748 726 748 0.98

13 20 1.5e-05 0.0014 20.0 5.4 1 23 754 776 754 776 0.98

14 20 9.2e-05 0.0084 17.5 8.7 1 23 782 804 782 804 0.96

15 20 2.6e-05 0.0023 19.3 7.1 1 23 810 832 810 832 0.97

16 20 3.6e-06 0.00033 21.9 6.0 1 23 838 860 838 860 0.98

17 20 0.00016 0.015 16.8 10.0 1 23 866 888 866 888 0.97

18 20 1.6e-06 0.00014 23.1 4.0 1 23 894 916 894 916 0.97

19 20 0.00085 0.078 14.5 0.3 1 23 923 945 923 945 0.96

20 20 0.037 3.4 9.3 5.1 1 23 955 977 955 977 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0001	0.0092	17.4	1.5	1	23	405	427	405	427	0.96
2	20	0.0049	0.45	12.1	0.6	1	20	433	452	433	455	0.94
3	20	3.5e-05	0.0032	18.8	4.6	1	23	474	496	474	496	0.98
4	20	0.00022	0.02	16.3	4.7	1	23	502	524	502	524	0.99
5	20	4.3e-05	0.004	18.5	5.3	1	23	530	552	530	552	0.97
6	20	9.3e-06	0.00085	20.6	7.1	1	23	558	580	558	580	0.97
7	20	8.3e-07	7.6e-05	23.9	2.9	1	23	586	608	586	608	0.97
8	20	0.00012	0.011	17.2	6.7	1	23	614	636	614	636	0.97
9	20	2.3e-05	0.0021	19.4	6.4	1	23	642	664	642	664	0.98
10	20	5.7e-07	5.2e-05	24.5	1.9	1	23	670	692	670	692	0.98
11	20	5.8e-05	0.0053	18.1	7.9	1	23	698	720	698	720	0.98
12	20	2.9e-05	0.0027	19.1	6.4	1	23	726	748	726	748	0.98
13	20	1.5e-05	0.0014	20.0	5.4	1	23	754	776	754	776	0.98
14	20	9.2e-05	0.0084	17.5	8.7	1	23	782	804	782	804	0.96
15	20	2.6e-05	0.0023	19.3	7.1	1	23	810	832	810	832	0.97
16	20	3.6e-06	0.00033	21.9	6.0	1	23	838	860	838	860	0.98
17	20	0.00016	0.015	16.8	10.0	1	23	866	888	866	888	0.97
18	20	1.6e-06	0.00014	23.1	4.0	1	23	894	916	894	916	0.97
19	20	0.00085	0.078	14.5	0.3	1	23	923	945	923	945	0.96
20	20	0.037	3.4	9.3	5.1	1	23	955	977	955	977	0.99

Sequence Information

Coding Sequence: ATGAATCCGGAGCACCACAATATCAACACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGCAACAACAACAGACTACCAATTTGACCCCGACGACATCTGCCACGGACCTCCGTGTCAACTCGGCGGCAGTAAATGTCGCTTTGTCTAGCGTCGCGAAATACTGGGTGTTTACAAATCTATTCCCGGGTCCAATACCGCAGGTATCGGTGTACGGACTGCCCACTGGGACGAGGATAGAAAATGGGAAACCATTGCAGGACCTTGGTCAAGCACATGCAAGCATACTCAATGGTGATCCAAATATTATACTTGGACATCCGGGGCAGCCTCAAGTTACTGTCTCGGCAGCACAACAGTTACCTCAGATAATAGCCACTCAAACAACAACACATGAAGCGCTAGCGCATGCTCAGCAGCAAGAGCTAGCCTCCCAGCAGGGCGCAGGCACCGGTCAGGTCACGACTAACACGGGTCAAACCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGGGCCACCACTCTCAGCAGCATATAATGCAGCAACAGCTGATGGCAGCAACCCGTCCTGAACACTCCAACCAGCAGATCCAGCTAACCGTGAGTGAAGATGGCATTGTGACGGTGGTGGACCCAGGCGGAGGCAAGCTAGTAGACAAGGAGGAATTACATGAAGCCATCAAGATGCCGGCAGACCACACCCTCACTGTGCATCAACTGCAACAGATTGTTGGGCAACAGGTGTTAGAGAACGTAGTCCGCATCGAGCAAGCGACTGGCGAGCCGGCGAACATACTCGTAACGCAAAACGCCGACGGCACCACGTCTATAGAAGCCAGCGCGGCAGACCCGCTCGCGGTGGTCAAGGACGAGAAAAGCGTGTCCAAAATAGAGACGGCGCATTTCGCGTTGCCTGCGGAAATAAAAGACCTCAAGGGTATTGATTTGAAGAGTGTAGGAGCGATGGGGATGGAAGGAGCCGTGGTGAAGATATCGGCCGGCGCCGCGGACCACGACATGCACGCCATGTATAAGGTCAACGTAGAGGACCTCTCACAGCTGCTAGCCTACCACGAAGTCTTCGGCAAACTCAATGCGGACGGACAGCCCCAAGCCAAAGTAATAGGTGAAGTGGAGGTAGAAGCTGGGACTAGCGCTGCCATGTCCGCGGAGGAGAATTCGCCCGGACACCATGCCTGTGATATTTGCGGGAAAATATTTCAATTCCGATACCAACTTATTGTTCATAGACGTTACCATGGCGAAAGGAAACCTTTCACGTGTCAAGTATGCGGTTCGGCCTTCGCCAATCCCGTCGAACTGTCGAGACACGGGAAATGTCATCTTGCCGGCGATCCAGCGGACAGGAGCGCCAAGAGGCTGACCCAGGACAAGCCTTACGCGTGCACGACCTGCCATAAAACGTTCGCGCGCAAGGAACACCTCGACAACCACGTCCGCAGCCACACCGGGGAAACTCCGTACCGatgtcaattctgcgcaaagactttcacccgcaaggagcacatggtgaaccacgtccgcaagcacacgggcgagacgccgcatcgatgtgacatctgcaagaagagctttaccaggaaagagcacttcatgaaccacgtcatgtgGCATACAGgtgaaacgccacaccattgtcaaatatgcggcaagaagtatactaggaaggagcacttagccaaccatatgcgatcacatacgaatgataccccgttccggtgcgaactgtgtggcaagtcgttcacgagaaaggaacacttcaccaatcacatactgtggcataccggcgaaacccctcaccgctgcgacttctgctctaagacattcacgcgcaaggagcacctactgaaccacgtgcgacaacacacgggcgagtcgccgcatcggtgcaactactgttccaagtcgttcacgcgccgcgaacatctcgtcaaccacgtgcgccagcacaccggcgagacgccattccagtgcggctactgtcccaaggccttcacccggaaggatcatttaGTGAACcacgtgcgccagcacacgggcgagtccccgcacaagtgctcgttctgcacgaagtcgttcacgcgcaaggagcatctcacgaaccacgtgcggcaacacaccggcgagtcgccgcaccggtgcacgtactgtgccaagtcctttacgaggaaggaacacctcaacaaccatgtcagacagcacacgggggaaactccgcacaagtgcacgttctgcccgaaggcgtactcgcgcaaggagcacctcaacaaccacatcCGCCAGCATACCGGCGACGCGCCGCACTGTTGCACCTATTGCAACAAGAGCTTCTCGAGGAAGGAGCATCTTGTCAATCACGTTAGGCAGcacacgggcgagacgccgttcaaatgcacgtactgttcgaagtcgttctcccgaaaggagcacctcacgaaccacgtgcacctgcacaccggggagacgccgcacaagtgccccttctgcaccaagaccttctccaggaaggagcatctcaccaaccacgtccgGATAcacacgggtgaatcccctcaccgctgcgagttctgccacaagacgttcacccggaaagagcatctcaccaaccacctgaagcagcacacgggtgacacgccgcactcctgcaaggtctgctccaaggccttcacgcgcaaggagcatctcgtcgcgcatatgAGATCGCACAGTTGcggcgagcggccgttcagttgcggcgaatgcggcaagtcgttcccgctgaaaggcaacttgttgttccacgagcgctcgcacaacaagaacggctctgcCGCCAGGCCGTTCCGCTGTGACGTGTGCTCTAAGGACTTCATGTGTAAAGGTCACCTGGCGTCGCACCGGCGCACGCACGCCGAGCCGCCGGCGGAGGGCGCGGCGGGCGACGCGGCCGCCGACGACTGCGGCGACTGCGGCAAGTGCGACAAGGACGCGCCCGACCAGCCCGAGCGGAAACACGACATCAGACCAGCAGCGGAAAGCCGGCCGGCTGAAAGCGCCGTTGCACAAAATCCCCAAGCTAACCCAACTGTGATGCAAATTACCAGCCAACAAGTGCGAGCTGGCACGACGGTGGGCCTGGACGCGGCCGCGAGCGGCACGTTCACGTCCGGCCACCTCGCGCACCACACCGTCACCGTCAACTACTAG
Protein Sequence: MNPEHHNINTGGGQPPGNSEQQQQTTNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPLQDLGQAHASILNGDPNIILGHPGQPQVTVSAAQQLPQIIATQTTTHEALAHAQQQELASQQGAGTGQVTTNTGQTHQQVPNNRVEFVHHNIDMGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPADHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNADGTTSIEASAADPLAVVKDEKSVSKIETAHFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDPADRSAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHCCTYCNKSFSRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHSCKVCSKAFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGSAARPFRCDVCSKDFMCKGHLASHRRTHAEPPAEGAAGDAAADDCGDCGKCDKDAPDQPERKHDIRPAAESRPAESAVAQNPQANPTVMQITSQQVRAGTTVGLDAAASGTFTSGHLAHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -