Basic Information

Insect: Archips crataeganus
Gene Symbol: -
Assembly: GCA_947859365.1
Location: OX402052.1:7735167-7758611[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0001 0.0069 17.4 1.5 1 23 408 430 408 430 0.96

2 20 0.005 0.34 12.1 0.6 1 20 436 455 436 458 0.94

3 20 3.5e-05 0.0024 18.8 4.6 1 23 477 499 477 499 0.98

4 20 0.00022 0.015 16.3 4.7 1 23 505 527 505 527 0.99

5 20 4.4e-05 0.003 18.5 5.3 1 23 533 555 533 555 0.97

6 20 7.1e-06 0.00048 21.0 7.2 1 23 561 583 561 583 0.97

7 20 8.5e-07 5.8e-05 23.9 2.9 1 23 589 611 589 611 0.97

8 20 0.00012 0.0082 17.2 6.7 1 23 617 639 617 639 0.97

9 20 2.3e-05 0.0016 19.4 6.4 1 23 645 667 645 667 0.98

10 20 5.8e-07 3.9e-05 24.5 1.9 1 23 673 695 673 695 0.98

11 20 5.9e-05 0.004 18.1 7.9 1 23 701 723 701 723 0.98

12 20 3e-05 0.002 19.1 6.4 1 23 729 751 729 751 0.98

13 20 1.6e-05 0.0011 20.0 5.4 1 23 757 779 757 779 0.98

14 20 3e-06 0.0002 22.2 5.9 1 23 785 807 785 807 0.97

15 20 2.6e-05 0.0018 19.3 7.1 1 23 813 835 813 835 0.97

16 20 3.6e-06 0.00025 21.9 6.0 1 23 841 863 841 863 0.98

17 20 0.00016 0.011 16.8 10.0 1 23 869 891 869 891 0.97

18 20 2e-06 0.00013 22.8 3.0 1 23 897 919 897 919 0.96

19 20 0.00087 0.059 14.5 0.3 1 23 926 948 926 948 0.96

20 20 0.021 1.4 10.1 5.2 1 23 958 980 958 980 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0001	0.0069	17.4	1.5	1	23	408	430	408	430	0.96
2	20	0.005	0.34	12.1	0.6	1	20	436	455	436	458	0.94
3	20	3.5e-05	0.0024	18.8	4.6	1	23	477	499	477	499	0.98
4	20	0.00022	0.015	16.3	4.7	1	23	505	527	505	527	0.99
5	20	4.4e-05	0.003	18.5	5.3	1	23	533	555	533	555	0.97
6	20	7.1e-06	0.00048	21.0	7.2	1	23	561	583	561	583	0.97
7	20	8.5e-07	5.8e-05	23.9	2.9	1	23	589	611	589	611	0.97
8	20	0.00012	0.0082	17.2	6.7	1	23	617	639	617	639	0.97
9	20	2.3e-05	0.0016	19.4	6.4	1	23	645	667	645	667	0.98
10	20	5.8e-07	3.9e-05	24.5	1.9	1	23	673	695	673	695	0.98
11	20	5.9e-05	0.004	18.1	7.9	1	23	701	723	701	723	0.98
12	20	3e-05	0.002	19.1	6.4	1	23	729	751	729	751	0.98
13	20	1.6e-05	0.0011	20.0	5.4	1	23	757	779	757	779	0.98
14	20	3e-06	0.0002	22.2	5.9	1	23	785	807	785	807	0.97
15	20	2.6e-05	0.0018	19.3	7.1	1	23	813	835	813	835	0.97
16	20	3.6e-06	0.00025	21.9	6.0	1	23	841	863	841	863	0.98
17	20	0.00016	0.011	16.8	10.0	1	23	869	891	869	891	0.97
18	20	2e-06	0.00013	22.8	3.0	1	23	897	919	897	919	0.96
19	20	0.00087	0.059	14.5	0.3	1	23	926	948	926	948	0.96
20	20	0.021	1.4	10.1	5.2	1	23	958	980	958	980	0.99

Sequence Information

Coding Sequence: ATGAATCCAGAGCATCACAATATCAATACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGCAGCAGCAGCAAACGACGAATGTGACCCCGACGAGTTCTGCAACGGACTTACGAGTGAACTCTGCGGCAGTAAACGTCGCTTTGTCTAGCGTCGCGAAATATTGGGTGTTTACAAATTTATTCCCGGGTCCCATACCGCAAGTTTCGGTTTACGGGCTTCCCACCGGAACGCGGATAGAAAATGGAAAACCAGTGCAGGATATTGGTCAAGCCCATGCAAGCATTCTTAATGGCGACCCAAACATCATACTTGGACATCACACAGGGCAGTCGCAAGTTACTGTCTCAGCAGCGCAACAGTTACCACAAATCATCGCTACTCAAACACAATCTCATGATTTGGCCCATGTACAGCAACAAGAGCTAGCATCACAGCAGGGCTCGGGCACAACCCAGGTCACCGTGAGCCCGGGTCAGACCACCCACCAGGTACCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGGTAAATCATGTGGATCATCATTTACAGCAACACATAATGCAACAACAGCTAATGGCCGCAACGCGCCCCGAGCACTCCAATCAACAGATCCAGTTGACAGTTAGCGAGGATGGCATTGTCACAGTGGTGGACCCTGGAGGGGGGAAGCTGGTGGACAAGGAGGAGTTGCATGAAGCTATCAAAATGCCTTCAGACCACACCCTCACTGTGCACCAGTTACAGCAAATCGTTGGGCAACAGGTCTTAGAAAACGTGGTCCGCATCGAGCAAGCAACCGGCGAGCCGGCCAACATCCTAGTTACACAGAACCCGGACGGAACCACGTCTATAGAAGCCAGCGCAGCCGATCCGCTAGCTGTCGTAAAAGACGAGAAAAGCTCCAAGATAGAGACTGCGCATTTCGCCTTGCCAGCCGAAATAAAGGACCTGAAGGGTATTGATCTAAAGAGTGTAGGAGCGATGGGGATGGAAGGAGCGGTGGTGAAGATATCAGCGGGTGCTTCCGACCATGATATGCATGCCATGTACAAAGTTAATGTAGAGGATCTGTCGCAGCTACTTGCTTACCACGAAGTCTTTGGCAAACTCAATGCCGACGGCCAGCCACAAGCCAAAGTGATAGGCGAAGTGGAAGTAGAAGCTGGAACGAGCGCGGCCATGTCGGCAGAAGAGTCATCACCTGGTCACCACGCCTGTGATATTTGCGGGAAAATATTCCAGTTCCGCTACCAACTTATTGTTCATAGACGATACCATGGCGAGCGGAAACCCTTCACGTGTCAAGTTTGTGGATCAGCCTTTGCGAATCCAGTTGAACTGTCAAGACACGGGAAATGCCATCTTGCTGGCGATCCAGCCGACAGGACGGCCAAAAGGTTGACCCAGGACAAACCTTATGCGTGCACGACTTGCCATAAAACGTTCGCGCGTAAGGAACACCTCGACAACCACGTAAGAAGTCACACCGGAGAGACCCCATACAGGTGTCAATTTTGCGCCAAAACGTTCACGCGCAAAGAACACATGGTCAATCACGTACGTAAACACACTGGTGAGACTCCGCACCGCTGCGACATCTGCAAGAAAAGCTTCACCAGGAAGGAACACTTTATGAACCACGTTATGTGGCACACTGGTGAAACTCCACATCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCCAACCATATGCGATCCCATACAAACGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATATTGTGGCATACTGGTGAAACGCCGCACCGTTGTGACTTCTGCTCTAAGACGTTCACCCGCAAGGAGCATCTACTCAACCACGTCCGGCAACACACTGGCGAGTCCCCGCATCGCTGTAACTACTGCTCCAAGTCGTTCACGCGCCGGGAGCACCTCGTCAATCATGTGCGCCAACACACTGGGGAAACACCCTTCCAGTGCGGATACTGCCCCAAAGCGTTCACGAGGAAAGACCATCTAGTGAACCACGTCAGACAGCACACGGGTGAATCTCCACACAAGTGCTCGTTCTGTACTAAATCCTTCACGCGCAAAGAGCACCTGACGAACCACGTGAGGCAACACACGGGGGAATCGCCCCACAGGTGCACCTACTGCGCGAAATCCTTCACCAGGAAGGAGCATCTCAATAATCACGTCAGACAGCACACGGGCGAAACTCCGCACAAATGTACGTTCTGCCCGAAGGCGTACTCTCGTAAGGAGCATCTCAACAACCACATCCGGCAACATACGGGAGACGCGCCGCACTCCTGTTCCTATTGCAACAAGAGTTTCTCCAGGAAGGAACATCTTGTCAATCATATTCGGCAACATACGGGCGAGACCCCGTTCAAGTGCACGTACTGTTCCAAGTCGTTCTCGCGCAAGGAGCACCTGACGAACCACGTCCACCTCCACACCGGGGAGACGCCGCACAAGTGCCCCTTTTGTACCAAAACCTTCTCCCGAAAAGAGCATCTTACTAATCACGTCAGAATACACACGGGCGAGTCCCCACATCGTTGCGAATTCTGTCACAAGACATTCACCAGGAAAGAACACTTGACCAACCATCTGAAGCAGCACACTGGAGACACGCCCCACGCTTGCAAAGTCTGCTCCAAGCCTTTCACTCGCAAGGAACATCTTGTCGCGCATATGAGATCCCACAGCTGCGGCGAGCGGCCGTTCAGTTGCGGCGAGTGCGGCAAGTCGTTCCCTCTGAAGGGTAACCTGCTGTTCCACGAGCGGTCGCACAACAAGAACGGCAGCGGCGCGAGACCCTTCCGCTGCGACATCTGCTCCAAGGATTTCATGTGCAAAGGTCATTTGGCGTCTCACCGGCGCACGCACAGCGAGGCAGCTGTGGAGGGCGCGGCCGACGCGCCCGCCGAAGAGGACTGCGGAGACTGCGTCAAGTGCGAGAAGGACCCGCTGGAGCAGCCCGAGCGGAAACATGATATTGGACCAGCAGCTGAAAGCAGACCTGCTGAAAATGCTGTAGCACAAAACCCCCAAGCTAATGCAACTGTGATGCAAATTACCAGTCAACAGGTGCGGGCGGGCTCGGCTTCGGGCGCGGCCGCGGTCGCGAGCGCCACGTTCACGGCCGCCGCGCCGCTGCACCACCCCGTCACCGTCAACTACTAA
Protein Sequence: MNPEHHNINTGGGQPPGNSEQQQQTTNVTPTSSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDIGQAHASILNGDPNIILGHHTGQSQVTVSAAQQLPQIIATQTQSHDLAHVQQQELASQQGSGTTQVTVSPGQTTHQVPNNRVEFVHHNIDMVNHVDHHLQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAVVKDEKSSKIETAHFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGASDHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAAMSAEESSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDPADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCSYCNKSFSRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGSGARPFRCDICSKDFMCKGHLASHRRTHSEAAVEGAADAPAEEDCGDCVKCEKDPLEQPERKHDIGPAAESRPAENAVAQNPQANATVMQITSQQVRAGSASGAAAVASATFTAAAPLHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -