Basic Information

Insect: Pandemis corylana
Gene Symbol: -
Assembly: GCA_949127965.1
Location: OX421857.1:5684374-5703312[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00011 0.0073 17.3 1.5 1 23 407 429 407 429 0.96

2 20 0.0054 0.35 12.0 0.6 1 20 435 454 435 457 0.94

3 20 3.9e-05 0.0025 18.8 4.6 1 23 476 498 476 498 0.98

4 20 0.00024 0.016 16.3 4.7 1 23 504 526 504 526 0.99

5 20 4.8e-05 0.0031 18.5 5.3 1 23 532 554 532 554 0.97

6 20 1e-05 0.00068 20.6 7.1 1 23 560 582 560 582 0.97

7 20 9.3e-07 6e-05 23.9 2.9 1 23 588 610 588 610 0.97

8 20 0.00013 0.0086 17.1 6.7 1 23 616 638 616 638 0.97

9 20 2.5e-05 0.0016 19.4 6.4 1 23 644 666 644 666 0.98

10 20 6.4e-07 4.1e-05 24.4 1.9 1 23 672 694 672 694 0.98

11 20 6.5e-05 0.0042 18.1 7.9 1 23 700 722 700 722 0.98

12 20 3.3e-05 0.0021 19.0 6.4 1 23 728 750 728 750 0.98

13 20 1.7e-05 0.0011 19.9 5.4 1 23 756 778 756 778 0.98

14 20 1e-05 0.00068 20.6 6.0 1 23 784 806 784 806 0.97

15 20 2.9e-05 0.0019 19.2 7.1 1 23 812 834 812 834 0.97

16 20 4e-06 0.00026 21.9 6.0 1 23 840 862 840 862 0.98

17 20 0.00018 0.011 16.7 10.0 1 23 868 890 868 890 0.97

18 20 2.1e-06 0.00014 22.8 3.0 1 23 896 918 896 918 0.96

19 20 0.00095 0.062 14.4 0.3 1 23 925 947 925 947 0.96

20 20 0.023 1.5 10.1 5.2 1 23 957 979 957 979 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00011	0.0073	17.3	1.5	1	23	407	429	407	429	0.96
2	20	0.0054	0.35	12.0	0.6	1	20	435	454	435	457	0.94
3	20	3.9e-05	0.0025	18.8	4.6	1	23	476	498	476	498	0.98
4	20	0.00024	0.016	16.3	4.7	1	23	504	526	504	526	0.99
5	20	4.8e-05	0.0031	18.5	5.3	1	23	532	554	532	554	0.97
6	20	1e-05	0.00068	20.6	7.1	1	23	560	582	560	582	0.97
7	20	9.3e-07	6e-05	23.9	2.9	1	23	588	610	588	610	0.97
8	20	0.00013	0.0086	17.1	6.7	1	23	616	638	616	638	0.97
9	20	2.5e-05	0.0016	19.4	6.4	1	23	644	666	644	666	0.98
10	20	6.4e-07	4.1e-05	24.4	1.9	1	23	672	694	672	694	0.98
11	20	6.5e-05	0.0042	18.1	7.9	1	23	700	722	700	722	0.98
12	20	3.3e-05	0.0021	19.0	6.4	1	23	728	750	728	750	0.98
13	20	1.7e-05	0.0011	19.9	5.4	1	23	756	778	756	778	0.98
14	20	1e-05	0.00068	20.6	6.0	1	23	784	806	784	806	0.97
15	20	2.9e-05	0.0019	19.2	7.1	1	23	812	834	812	834	0.97
16	20	4e-06	0.00026	21.9	6.0	1	23	840	862	840	862	0.98
17	20	0.00018	0.011	16.7	10.0	1	23	868	890	868	890	0.97
18	20	2.1e-06	0.00014	22.8	3.0	1	23	896	918	896	918	0.96
19	20	0.00095	0.062	14.4	0.3	1	23	925	947	925	947	0.96
20	20	0.023	1.5	10.1	5.2	1	23	957	979	957	979	0.99

Sequence Information

Coding Sequence: ATGAATCCAGAACATCACAATATCAATACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGcagcagcagcagcaaaCGACGAACGTGACTCCGACTAGTTCTGCGACGGACCTACGAGTTAACTCTGCTGCAGTAAACGTCGCTTTGTCTAGCGTTGCGAAGTATTGGGTGTTTACAAATTTGTTCCCGGGTCCCATACCGCAAGTTTCGGTGTACGGACTTCCCACCGGAACGCGGATAGAAAATGGCAAACCAGTGCAGGATATTGGTCAAGCCCATGCTAGCATACTCAATGGAGACCCAAACATTATACTCGGGCATCATACAGGGCAGTCGCAAGTCACAGTCTCAGCAGCGCAACAGTTACCACAAATCATTgcaactcaaactcaaactcatgATGCTCTTGCCCATGTGCAGCAGCAAGAGCTAGCATCCCAGCAGGGCTCGGGCACGACCCAAGTCACCGTGAGCCCGGGTCAAACCACCCACCAGGTACCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGGATCATCATTTACAGCAACACATAATGCAACAACAGCTGATGGCCGCATCGCGCCCCGAACACTCCAATCAACAGATCCAGCTGACTGTTAGCGAGGACGGCATCGTTACAGTGGTGGACCCAGGAGGGGGTAAACTTGTGGACAAAGAGGAACTGCATGAAGCTATCAAGATGCCTGCGGACCACACCCTCACTGTGCACCAGTTACAACAAATCGTTGGGCAACAGGTGTTAGAAAACGTGGTTCGCATCGAGCAAGCGACCGGCGAGCCTGCGAACATCCTCGTAACGCAGAACCCGGACGGAACAACGTCTATCGAGGCCAGCGCGGCCGACCCACTCGCCATCGTAAAAGACGAGAAAAGCGGCTCCAAGATTGAGACAGCGCATTTCGCGCTGCCCGCCGAAATAAAGGACCTCAAGGGCATTGATTTGAAGAGTGTAGGAGCGATGGGGATGGAAGGGGCGGTGGTAAAGATATCAGCTGGTGCTGCCGACCATGATATGCATGCCATGTACAAAGTTAATGTAGAGGATCTATCGCAGCTACTGGCTTACCACGAAGTCTTTGGCAAACTCAACGCCGACGGCCAGCCACAAGCCAAAGTGATAGGCGAAGTGGAAGTAGAAGCGGGAACGAGCGCGGCCATGTCGGCGGAGGAATCCTCGCCCGGCCACCACGCCTGTGATATTTGCGGGAAGATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGATACCACGGTGAGCGGAAACCCTTCACGTGTCAAGTTTGTGGGTCAGCCTTCGCGAATCCTGTTGAACTATCACGGCACGGAAAATGCCATCTTGCTGGCGATTCAGCCGATAGGACGGCCAAAAGGTTGACCCAGGACAAGCCTTATGCCTGCACGACTTGCCATAAAACGTTCGCGCGAAAGGAACACCTCGACAACCACGTTCGAAGTCACACCGGAGAGACGCCTTATAGGTGTCAATTTTGCGCCAAAACGTTTACGCGCAAAGAACACATGGTCAACCACGTGCGTAAACACACGGGCGAGACTCCGCACCGCTGTGACATCTGCAAGAAAAGCTTCACAAGGAAGGAACACTTTATGAACCACGTCATGTGGCACACGGGTGAGACTCCACATCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCCAACCATATGCGATCCCATACAAACGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACATTTCACCAATCACATATTGTGGCATACTGGTGAAACGCCGCACCGCTGCGACTTCTGCTCCAAAACGTTCACGCGCAAGGAGCACCTGCTCAACCACGTGCGGCAGCACACGGGGGAGTCCCCGCACCGCTGCAACTACTGCTCCAAGTCGTTCACGCGCCGCGAACACCTCGTCAACCACGTGCGTCAGCACACGGGCGAGACGCCCTTCCAATGCGGGTACTGCCCGAAGGCGTTCACGAGGAAAGACCATCTAGTAAACCATGTCAGACAGCATACGGGCGAGTCCCCGCACAAGTGCTCGTTCTGTACGAAGTCGTTCACGCGCAAAGAGCACCTGACGAACCACGTGCGGCAGCACACGGGGGAATCGCCCCACAGGTGCACGTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCACGTCAGACAGCACACTGGCGAAACTCCGCACAAGTGCACGTTCTGCCCGAAGGCGTACTCCCGTAAGGAGCACCTCAACAACCACATCAGGCAACATACGGGCGACGCGCCGCACTCTTGTTCCTATTGCAGCAAGACTTTCTCCAGGAAGGAACATCTTGTCAATCATATTCGGCAACACACGGGCGAGACCCCGTTCAAGTGCACGTACTGCTCGAAGTCGTTCTCGCGCAAGGAGCACCTCACCAACCACGTCCACCTCCACACCGGGGAGACGCCCCACAAGTGCCCCTTCTGCACCAAAACGTTCTCCCGAAAGGAGCATCTCACCAATCATGTCAGAATACACACGGGGGAGTCCCCGCATCGGTGcgaattttgtcacaagacgtTCACCCGGAAAGAGCACCTGACCAACCATCTGAAGCAGCACACGGGGGACACGCCCCACGCTTGCAAAGTCTGCTCCAAGCCTTTCACACGCAAGGAGCATCTTGTCGCGCATATGAGATCGCACAGTTGCGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGTTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACAACAAGAACggcagcggcgcgcggcccTTCCGTTGCGACATATGCTCCAAGGATTTCATGTGCAAAGGTCATTTGGCGTCTCACCGGCGTACGCACAGCGAGGCGGCGGCTGAGGGCGCGGCCGACGCGGCGCCCGAGGAGGACTGCGGCGACTGCGTCAAGTGCGAGAAGGACTCACCCGACCAGCCCGAGCGGAAACACGAAATCAGACCAGCAGCGGAAAGCAGACCTGCTGAAAACGCTGTAGCACAAAATCCCCAAGCGAATGCAACTGTGATGCAAATTACCAGTCAAatcagcttgGAAGGGAGCTGTGGCTGTCAATTGTTCAGTGTACTTTATGATGTAATATGTAACGTGTGTACCCAGCAGGTGCGTGCGGGCGGGGCGCCGGGCGCCGCCGCGGTCCCGAGCGCCACCTTCACGGCCGCCGCGCCACTCCACCATCCTGTCACCGTCAACTACTAA
Protein Sequence: MNPEHHNINTGGGQPPGNSEQQQQQTTNVTPTSSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDIGQAHASILNGDPNIILGHHTGQSQVTVSAAQQLPQIIATQTQTHDALAHVQQQELASQQGSGTTQVTVSPGQTTHQVPNNRVEFVHHNIDMDHHLQQHIMQQQLMAASRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPADHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAIVKDEKSGSKIETAHFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAAMSAEESSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDSADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCSYCSKTFSRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHACKVCSKPFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGSGARPFRCDICSKDFMCKGHLASHRRTHSEAAAEGAADAAPEEDCGDCVKCEKDSPDQPERKHEIRPAAESRPAENAVAQNPQANATVMQITSQISLEGSCGCQLFSVLYDVICNVCTQQVRAGGAPGAAAVPSATFTAAAPLHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -