Basic Information

Insect: Pammene aurita
Gene Symbol: -
Assembly: GCA_947086415.1
Location: OX352294.1:12166632-12203177[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00013 0.014 17.2 1.5 1 23 557 579 557 579 0.96

2 20 0.0063 0.7 11.9 0.6 1 20 585 604 585 607 0.94

3 20 4.7e-05 0.0052 18.6 4.4 1 23 626 648 626 648 0.98

4 20 0.00028 0.031 16.1 4.7 1 23 654 676 654 676 0.99

5 20 5.6e-05 0.0062 18.3 5.3 1 23 682 704 682 704 0.97

6 20 1.2e-05 0.0013 20.4 7.1 1 23 710 732 710 732 0.97

7 20 1.1e-06 0.00012 23.7 2.9 1 23 738 760 738 760 0.97

8 20 0.00015 0.017 17.0 6.7 1 23 766 788 766 788 0.97

9 20 2.9e-05 0.0033 19.2 6.4 1 23 794 816 794 816 0.98

10 20 7.3e-07 8.2e-05 24.3 1.9 1 23 822 844 822 844 0.98

11 20 7.5e-05 0.0083 17.9 7.9 1 23 850 872 850 872 0.98

12 20 3.8e-05 0.0042 18.9 6.4 1 23 878 900 878 900 0.98

13 20 3.8e-06 0.00043 22.0 5.2 1 23 906 928 906 928 0.98

14 20 3.8e-06 0.00042 22.0 5.9 1 23 934 956 934 956 0.97

15 20 3.3e-05 0.0037 19.0 7.1 1 23 962 984 962 984 0.97

16 20 4.6e-06 0.00051 21.7 6.0 1 23 990 1012 990 1012 0.98

17 20 0.0002 0.023 16.6 10.0 1 23 1018 1040 1018 1040 0.97

18 20 2e-06 0.00022 22.9 4.0 1 23 1046 1068 1046 1068 0.97

19 20 0.0011 0.12 14.3 0.3 1 23 1075 1097 1075 1097 0.96

20 20 0.1 12 8.0 6.1 1 23 1106 1128 1106 1128 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00013	0.014	17.2	1.5	1	23	557	579	557	579	0.96
2	20	0.0063	0.7	11.9	0.6	1	20	585	604	585	607	0.94
3	20	4.7e-05	0.0052	18.6	4.4	1	23	626	648	626	648	0.98
4	20	0.00028	0.031	16.1	4.7	1	23	654	676	654	676	0.99
5	20	5.6e-05	0.0062	18.3	5.3	1	23	682	704	682	704	0.97
6	20	1.2e-05	0.0013	20.4	7.1	1	23	710	732	710	732	0.97
7	20	1.1e-06	0.00012	23.7	2.9	1	23	738	760	738	760	0.97
8	20	0.00015	0.017	17.0	6.7	1	23	766	788	766	788	0.97
9	20	2.9e-05	0.0033	19.2	6.4	1	23	794	816	794	816	0.98
10	20	7.3e-07	8.2e-05	24.3	1.9	1	23	822	844	822	844	0.98
11	20	7.5e-05	0.0083	17.9	7.9	1	23	850	872	850	872	0.98
12	20	3.8e-05	0.0042	18.9	6.4	1	23	878	900	878	900	0.98
13	20	3.8e-06	0.00043	22.0	5.2	1	23	906	928	906	928	0.98
14	20	3.8e-06	0.00042	22.0	5.9	1	23	934	956	934	956	0.97
15	20	3.3e-05	0.0037	19.0	7.1	1	23	962	984	962	984	0.97
16	20	4.6e-06	0.00051	21.7	6.0	1	23	990	1012	990	1012	0.98
17	20	0.0002	0.023	16.6	10.0	1	23	1018	1040	1018	1040	0.97
18	20	2e-06	0.00022	22.9	4.0	1	23	1046	1068	1046	1068	0.97
19	20	0.0011	0.12	14.3	0.3	1	23	1075	1097	1075	1097	0.96
20	20	0.1	12	8.0	6.1	1	23	1106	1128	1106	1128	0.99

Sequence Information

Coding Sequence: ATGAATACGGAGCATCACAATATCAATACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGCAGCAGCAACAGACGGCGAACTTGACCCCTACGACATCCGCTACCGACCTACGAGTCAACTCGGCGGCAGTAAACGTCGCTTTGTCTAGCGTTGCGAAGTACTGGGTGTTTACAAATCTCTTCCCGGGACCAATACCGCAAGTATCGGTATATGGGCTGCCGACGGGTACAAGGATAGAAAATGGGAAACCAGTGCAGGACCTTGGTCAAGCCCATGCAAGCATACTCAATGGAGACCCCAACATCATACTTGGACACCCGGGACAGACCCAAGTTACTGTCTCGGCAGCGCAGCAGTTACCACAGATCATAGCCACACAGACACAAACGCATGATGTCCTAGCCCACGCTCAACAACAAGAGTTGTCGCAGCAGGCCGGCCAGGTCGCAGCCAACTCGGGTCAGACCCACCAGCAGGTAGTCAATAACCGGGTCGAGTTTGTACACCATAACATAGATATGGGGCATCACTCCCAGCAACATATCATGCAGCAGCAGCTAATGGCCGCCACAAGGCCAGACCACTCTAATCAGCAGATCCAGCTAACGGTGAGCGAAGACGGCATCGTCACCGTGGTAGACCCTGGCGGAGGCAAGCTGGTCGACAAGGAGGAGCTACACGAGGCTATCAAGATGCCGTCGGACCACACGCTCACCGTGCATCAGCTGCAGCAAATTGTGGGGCAACAGGTAAACCTTTACTATATTAGCGAAGACGGCATCGTCACCGTGGTAGACCCTGGCGGAGGCAAGCTGGTCGACAAGGAGGAGCTACACGAAGCCATCAAGATGCCGTCGGACCACACGCTCACCGTGCATCAGCTGCAGCAAATTGTGGGGCAACAGGTAAACCTTTACTATATTAGCGAAGACGGCATCGTCACCGTGGTAGACCCTGGCGGAGGCAAGCTGGTCGACAAGGAGGAGCTACACGAAGCCATCAAGATGCCGTCGGACCACACGCTCACCGTGCATCAGCTGCAGCAAATTGTGGGGCAACAGGTAAACCTTTACTATATTAGCGAAGACGACATCGTCACCGTGGTAGACCCTGGCGGAGGCAAGCTGGTCGACAAGGAGGAGCTACACGAAGCCATCAAGATGCCGTCGGACCACACGCTCACCGTGCATCAGCTGCAGCAAATTGTGGGACAACAGGTGTTAGAGAACGTAGTTCGCATCGAGCAAGCCACGGGCGAGCCGGCCAACATCCTCGTCACCCAGAACCCCGACGGCACCACGTCCATAGAGGCCAGCGCCGCGGACCCTCTGTCCATAGTCAAGGACGAAAAGGGTGGCTCCAAAATAGAGACTGCTCACTTCGCGCTGCCTGCTGAGATAAAGGACCTTAAGAGCATTGATTTAAAGAGTGTGGGAGCAATGGGTATGGAGGGAGCCGTAGTAAAGATATCCGCCGGAGCGGCCGACCACGACATGCACGCCATGTACAAGGTCAACGTGGAGGACCTGTCCCAGCTGCTGGCCTACCACGAGGTCTTCGGCAAGCTCAATGCTGATGGACAGCCCCAAGCCAAAGTAATAAGTGAAGTGGAGGTGGAAGCGGGCACCAGCGCCGCCATGTCGGCCGAGGAGAACTCGCCCGGCCACCACGCCTGTGATATTTGCGGGAAGATATTCCAGTTCCGGTACCAACTCATTGTTCATAGACGGTACCATGGCGAAAGGAAGCCATTCACGTGTCAAGTGTGTGGTTCGGCCTTTGCCAATCCAGTGGAGCTGTCGAGACACGGGAAATGCCATCTTGCCGGCGAGCCGGCGGACAGGAGCGCCAAGCGGCTGACGCAGGACAAGCCGTACGCGTGCAGCACGTGCCACAAGACCTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACCGGGGAGACGCCCTACAGGTGTCAATTCTGCGCCAAAACTTTCACCCGGAAAGAGCACATGGTGAACCACGTCCGCAAACACACGGGCGAGACTCCGCACCGGTGCGACATCTGCAAGAAGAGCTTCACGAGGAAGGAGCACTTCATGAACCACGTCATGTGGCATACAGGTGAAACTCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCACTTAGCGAACCATATGAGGTCACATACGAATGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACCGGTGAAACTCCCCATCGCTGTGACTTCTGCTCCAAGACGTTCACACGCAAAGAGCATTTACTGAACCACGTCCGGCAACACACGGGCGAGTCTCCGCACCGCTGCAACTACTGCTCCAAGTCCTTCACGCGGCGCGAGCACCTGGTCAACCACGTGCGCCAGCACACCGGGGAGACGCCCTTCCAGTGCGGGTACTGCCCCAAGGCCTTCACGAGGAAGGACCATCTAGTGAATCACGTTCGACAGCACACGGGCGAGTCCCCGCACAAGTGCTCGTTCTGCACCAAGTCGTTCACGCGCAAGGAGCACCTCACCAACCACGTGCGGCAGCACACGGGAGAGTCGCCCCACAGGTGCACGTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCATGTTAGACAGCACACGGGGGAGACTCCGCACAAGTGCACGTACTGCCCGAAGGCGTACTCCCGCAAGGAACACCTCAACAACCACATCCGGCAGCACACGGGCGACGCGCCGCACTCCTGCTCCTACTGCAACAAGAGCTTCTCGAGGAAGGAGCATCTTGTCAACCATATCCGGCAACACACGGGCGAGACTCCGTTCAAGTGCACATACTGCTCGAAGTCGTTCTCCCGCAAGGAGCACCTCACGAACCACGTGCACCTGCACACCGGCGAGACGCCGCACAAGTGCCCCTTCTGCACCAAAACCTTCTCGCGCAAGGAGCACCTAACCAACCACGTCAGGATACACACGGGGGAGTCGCCTCACCGCTGCGAGTTCTGCCATAAAACGTTCACGCGGAAGGAACACCTCACCAACCACCTCAAGCAGCACACGGGCGACACGCCGCACTCCTGCAAGGTGTGCTCCAAGGCCTTCACGCGCAAGGAACACCTGGTGGCTCATATGAGGTCGCACAGCTGCGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACAACAAGAACGGCGGCGCGCGCCCCTTCCGCTGCGACGTCTGCTCCAAGGACTTCATGTGCAAGGGGCATCTGTCATCGCACCGACGGACGCACGCGGGCGCGGGCGCGGGCGCGGAGGCGGCGGCGGGCGACGCGGCCGAAACCACCGAGGCCGCCGAGGACTGCGGCGACTGCGGCGTCAAGTGCGAGAAGGAGGCCGCCGAGCCCGAGCGCAAGCACGACCCCAGAACTGCAGCGAACGCAAGTCCGGCGGAAAGCGCCGTCGCACAAAACCCCCAGACTAACGCCACTGTGATGCAAATTACCAGTCAACAGGTCCGCGCGGCCGGCGGCGGCGTGGCGCTGGAGGCGGGCGCGGCCGGCTTCGCGCACCCCGTCTCCGTCTCCGTCAACTACTAG
Protein Sequence: MNTEHHNINTGGGQPPGNSEQQQQTANLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHPGQTQVTVSAAQQLPQIIATQTQTHDVLAHAQQQELSQQAGQVAANSGQTHQQVVNNRVEFVHHNIDMGHHSQQHIMQQQLMAATRPDHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVNLYYISEDGIVTVVDPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVNLYYISEDGIVTVVDPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVNLYYISEDDIVTVVDPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLSIVKDEKGGSKIETAHFALPAEIKDLKSIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVISEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGEPADRSAKRLTQDKPYACSTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTYCPKAYSRKEHLNNHIRQHTGDAPHSCSYCNKSFSRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHSCKVCSKAFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGGARPFRCDVCSKDFMCKGHLSSHRRTHAGAGAGAEAAAGDAAETTEAAEDCGDCGVKCEKEAAEPERKHDPRTAANASPAESAVAQNPQTNATVMQITSQQVRAAGGGVALEAGAAGFAHPVSVSVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: -
80% Identity: -