Basic Information

Insect: Epinotia ramella
Gene Symbol: -
Assembly: GCA_947578815.1
Location: OX388211.1:9189454-9216293[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00012 0.0095 17.3 1.5 1 23 482 504 482 504 0.96

2 20 0.0057 0.46 12.0 0.6 1 20 510 529 510 532 0.94

3 20 4e-05 0.0033 18.7 4.6 1 23 551 573 551 573 0.98

4 20 0.00025 0.021 16.2 4.7 1 23 579 601 579 601 0.99

5 20 5e-05 0.0041 18.4 5.3 1 23 607 629 607 629 0.97

6 20 1.1e-05 0.00088 20.5 7.1 1 23 635 657 635 657 0.97

7 20 9.7e-07 7.9e-05 23.8 2.9 1 23 663 685 663 685 0.97

8 20 0.00014 0.011 17.0 6.7 1 23 691 713 691 713 0.97

9 20 2.6e-05 0.0021 19.3 6.4 1 23 719 741 719 741 0.98

10 20 6.6e-07 5.4e-05 24.3 1.9 1 23 747 769 747 769 0.98

11 20 6.8e-05 0.0055 18.0 7.9 1 23 775 797 775 797 0.98

12 20 3.4e-05 0.0028 19.0 6.4 1 23 803 825 803 825 0.98

13 20 1.8e-05 0.0014 19.8 5.4 1 23 831 853 831 853 0.98

14 20 1e-05 0.00084 20.6 6.0 1 23 859 881 859 881 0.97

15 20 3e-05 0.0024 19.1 7.1 1 23 887 909 887 909 0.97

16 20 4.1e-06 0.00034 21.8 6.0 1 23 915 937 915 937 0.98

17 20 0.00018 0.015 16.7 10.0 1 23 943 965 943 965 0.97

18 20 1.8e-06 0.00015 23.0 4.0 1 23 971 993 971 993 0.97

19 20 0.00099 0.08 14.4 0.3 1 23 1000 1022 1000 1022 0.96

20 20 0.041 3.3 9.3 5.1 1 23 1032 1054 1032 1054 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00012	0.0095	17.3	1.5	1	23	482	504	482	504	0.96
2	20	0.0057	0.46	12.0	0.6	1	20	510	529	510	532	0.94
3	20	4e-05	0.0033	18.7	4.6	1	23	551	573	551	573	0.98
4	20	0.00025	0.021	16.2	4.7	1	23	579	601	579	601	0.99
5	20	5e-05	0.0041	18.4	5.3	1	23	607	629	607	629	0.97
6	20	1.1e-05	0.00088	20.5	7.1	1	23	635	657	635	657	0.97
7	20	9.7e-07	7.9e-05	23.8	2.9	1	23	663	685	663	685	0.97
8	20	0.00014	0.011	17.0	6.7	1	23	691	713	691	713	0.97
9	20	2.6e-05	0.0021	19.3	6.4	1	23	719	741	719	741	0.98
10	20	6.6e-07	5.4e-05	24.3	1.9	1	23	747	769	747	769	0.98
11	20	6.8e-05	0.0055	18.0	7.9	1	23	775	797	775	797	0.98
12	20	3.4e-05	0.0028	19.0	6.4	1	23	803	825	803	825	0.98
13	20	1.8e-05	0.0014	19.8	5.4	1	23	831	853	831	853	0.98
14	20	1e-05	0.00084	20.6	6.0	1	23	859	881	859	881	0.97
15	20	3e-05	0.0024	19.1	7.1	1	23	887	909	887	909	0.97
16	20	4.1e-06	0.00034	21.8	6.0	1	23	915	937	915	937	0.98
17	20	0.00018	0.015	16.7	10.0	1	23	943	965	943	965	0.97
18	20	1.8e-06	0.00015	23.0	4.0	1	23	971	993	971	993	0.97
19	20	0.00099	0.08	14.4	0.3	1	23	1000	1022	1000	1022	0.96
20	20	0.041	3.3	9.3	5.1	1	23	1032	1054	1032	1054	0.99

Sequence Information

Coding Sequence: ATGAATTCGGAGCATCACAATATTAACACGGGTGGCGGCCAGCCCCAAGGAAATTCAGAGCAGCAGCAGCAGACGGCGAATTTGACCCCGACGACGTCTGCCACGGACCTGCGAGTGAACTCGGCGGCCGTAAACGTCGCTTTGTCTAGCGTCGCAAAGTACTGGGTGTTTACAAATCTTTTTCCGGGGCCTATACCGCAAGTGTCGGTATATGGGCTGCCCACTGGAACGAGAATAGAAAATGGGAAACCAGTGCAGGACCTTGGTCAAGCCCATGCAAGCATACTCAATGGTGATCCCAACATTATACTTGGACATCCGGGACAGACCCAAGTTACTGTCTCGGCGGCGCAACAGTTACCACAGATTATTGCCACACAGACGCAAACACATGATGTCCTAGCTCATGTGCAGCAACAAGAGCTACAGCAGGGCACGGTCAACTCCGGACAGGTGACGACTAACACGGGTCAAACAACCCATCAGCAGGTAGCCAATAATCGGGTCGAGTTTGTACACCATAACATTGATATGGGTCACCACTCGCAACAACACATAATGCAGCAGCAGCTAATGGCGGCGACACGGCCAGATCACTCCAACCAGCAGATCCAGCTAACTGTGAGTGAAGACGGGATCGTCACCGTGGTGGACCCGGGCGGGGGCAAGCTTGTGGATAAAGAGGAGCTGCATGAGGCGATCAAGATGCCGACAGACCACACCCTCACTGTGCACCAGCTGCAACAAATTGTTGGGCAACAGGTGCTAGAAAACGTGGTCCGTATCGAGCAAGCCACCGGCGAGCCGGCGAACATTCTCGTGACGCAGAACCCGGACGGCACCACGTCCATAGAGGCCAGCGCCGCGGACCCGCTCGCCATCGTCAAGGACGAAAAGAACGGCTCCAAGATAGAGACTACGCACTTCGCGCTGCCCGCCGAGATCAAGGACCTTAAGAGCATCGACTTAAAGAACCAGGACGTCACCACGTTTATAGAGTCCAGCGCCGCGGATCCGCTCGCCGTCGTCATGGACGAAAAGAACGGCTCCAAGATAGAGACTAGAAAAAAAAAAAAAACTAATGGCGGCAACACGTGTTTGAAAGCTGTTGTGGTAACAAGCGGTCCCTGGGTTACTATAGGATGCCACCTGGATAACGCTATGATGACGACATCGTTAATATTCCACTTTTGTTTGACACAGAGTGTAGGAGCGATGGGGATGGAAGGAGCCGTAGTGAAGATATCAGCGGGAGCCTCCGACCACGACATGCACGCCATGTACAAAGTCAACGTGGAAGATCTGTCGCAGCTGCTGGCCTACCACGAGGTCTTCGGCAAACTCAATGCTGATGGTCAGCCGCAAGCCaaaGTAATAGAAGAAGTGGAGGTCGAAGCGGGAACTAGCGCCGCCATGTCCGCCGACGAGAACTCGCCCGGACACCATGCCTGTGATATTTGTGGGAAAATCTTTCAATTTCGATACCAACTCATTGTCCATAGACGGTACCACGGTGAAAGGAAACCTTTCACGTGTCAAGTATGCGGCTCCGCCTTCGCCAATCCCGTGGAGCTGTCGAGACACGGGAAATGTCATCTTGCCGGCGACTCAGCAGACAGGACTGCTAAGCGGCTGACGCAGGACAAGCCGTACGCGTGCACGACCTGCCATAAAACGTTCGCGCGCAAGGAGCACCTCGACAACCACGTGCGCAGCCACACCGGGGAGACACCCTACAGATGTCAATTCTGCGCGAAGACCTTCACCCGCAAGGAGCACATGGTGAACCACGTCCGCAAGCACACGGGCGAGACGCCGCATCGCTGCGACATCTGTAAGAAAAGCTTCACGCGGAAGGAACACTTCATGAACCACGTCATGTGGCATACAGGTGAAACTCCACACCATTGTCAAATATGCGGAAAGAAGTATACTAGGAAGGAGCACTTAGCGAACCATATGAGATCACATACGAATGATACCCCGTTCCGCTGCGAACTCTGTGGGAAGTCTTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACTGGAGAAACGCCCCACCGCTGCGACTTCTGCTCGAAAACCTTTACGCGCAAAGAGCACCTCCTCAATCACGTGCGACAGCACACGGGCGAGTCCCCGCACAGATGCAACTACTGCTCCAAGTCCTTCACGCGCCGCGAACACCTCGTCAACCACGTGCGGCAGCACACCGGCGAAACGCCCTTCCAGTGCGGCTACTGTCCCAAGGCCTTCACCCGCAAGGACCACCTAGTGAATCACGTGCGACAGCACACCGGCGAGTCGCCGCACAAATGCTCGTTCTGCACCAAGTCGTTCACACGCAAGGAGCACCTCACCAACCACGTGCGGCAGCACACGGGCGAGTCGCCGCACAGGTGCACCTACTGCGCCAAGTCGTTCACTAGGAAGGAGCATCTCAACAACCACGTCAGACAGCATACGGGGGAAACGCCGCACAAGTGCACGTTCTGCCCGAAGGCGTACTCGCGCAAGGAGCATCTCAACAACCACATCAGGCAGCACACGGGCGACGCGCCGCACTCGTGCACCTACTGCAACAAGAGCTTCTCTAGGAAGGAGCATCTCGTCAACCACGTTCGGCAACACACGGGCGAGACGCCTTTCAAGTGCACCTACTGCTCGAAGTCGTTCTCCCGCAAGGAGCACCTCACAAACCACGTGCACCTACACACGGGCGAGACTCCGCACAAGTGCCCCTTCTGCACCAAGACTTTCTCGCGCAAGGAGCACCTGACCAACCACGTCAGGATACACACGGGCGAGTCGCCTCATCGCTGCGAGTTCTGCCATAAAACGTTCACGCGCAAGGAGCACCTCACCAACCACCTCAAGCAGCACACCGGAGACACGCCGCACTCCTGCAAGGTCTGCTCCAAGGCCTTCACCCGCAAGGAGCACCTCGTCGCGCACATGAGATCGCACAGTTGCGGCGAGCGGCCGTTCAGCTGCGGCGAGTGCGGCAAGTCGTTCCCTCTCAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACAACAAGAACGGAGGCGGCGCCCGACCCTTCCGCTGCGAGGTCTGCTCCAAGGACTTCATGTGCAAAGGTCACCTGGCGTCGCACCGGCGCACGCACGCGGCGGGTGCGGACGCGGACGCCGGCGCGGGAGCGGGCGCGGAGGCGGAAACGGACGGCGCGGCGGGCGCGGGCGCGGAGTCCGAAGACTGCGGCGACTGCGTCAAGTGCGAGAAGGACGCGCCCGAGCCCGAGCGGAAACACGCACTCAGACCGGCTGCGGACGCGAGGCCGGCTGAAAGCGCTGTAGCACAAAACCCCCAAGCTAATGCAACTGTGATGCAAATTACCAGCCAACAAGTCCGCGCGCCAGCAGGTGTAGGACTGGACGCGGCCGGCGCCGCCTTCGCGCACCCGGTCACCGTCAACTACTAG
Protein Sequence: MNSEHHNINTGGGQPQGNSEQQQQTANLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHPGQTQVTVSAAQQLPQIIATQTQTHDVLAHVQQQELQQGTVNSGQVTTNTGQTTHQQVANNRVEFVHHNIDMGHHSQQHIMQQQLMAATRPDHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPTDHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNPDGTTSIEASAADPLAIVKDEKNGSKIETTHFALPAEIKDLKSIDLKNQDVTTFIESSAADPLAVVMDEKNGSKIETRKKKKTNGGNTCLKAVVVTSGPWVTIGCHLDNAMMTTSLIFHFCLTQSVGAMGMEGAVVKISAGASDHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIEEVEVEAGTSAAMSADENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDSADRTAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCTYCNKSFSRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHSCKVCSKAFTRKEHLVAHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHNKNGGGARPFRCEVCSKDFMCKGHLASHRRTHAAGADADAGAGAGAEAETDGAAGAGAESEDCGDCVKCEKDAPEPERKHALRPAADARPAESAVAQNPQANATVMQITSQQVRAPAGVGLDAAGAAFAHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00656346;
80% Identity: -