Basic Information

Insect: Hedya salicella
Gene Symbol: -
Assembly: GCA_905404275.1
Location: FR990103.1:8825189-8854932[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00011 0.012 17.4 1.5 1 23 406 428 406 428 0.96

2 20 0.0052 0.58 12.1 0.6 1 20 434 453 434 456 0.94

3 20 3.7e-05 0.0041 18.8 4.6 1 23 475 497 475 497 0.98

4 20 0.00023 0.026 16.3 4.7 1 23 503 525 503 525 0.99

5 20 4.6e-05 0.0051 18.5 5.3 1 23 531 553 531 553 0.97

6 20 9.9e-06 0.0011 20.6 7.1 1 23 559 581 559 581 0.97

7 20 8.8e-07 9.9e-05 23.9 2.9 1 23 587 609 587 609 0.97

8 20 0.00013 0.014 17.1 6.7 1 23 615 637 615 637 0.97

9 20 2.4e-05 0.0027 19.4 6.4 1 23 643 665 643 665 0.98

10 20 6e-07 6.8e-05 24.4 1.9 1 23 671 693 671 693 0.98

11 20 6.1e-05 0.0069 18.1 7.9 1 23 699 721 699 721 0.98

12 20 3.1e-05 0.0035 19.1 6.4 1 23 727 749 727 749 0.98

13 20 1.6e-05 0.0018 19.9 5.4 1 23 755 777 755 777 0.98

14 20 9.4e-06 0.0011 20.7 6.0 1 23 783 805 783 805 0.97

15 20 2.7e-05 0.003 19.2 7.1 1 23 811 833 811 833 0.97

16 20 3.8e-06 0.00042 21.9 6.0 1 23 839 861 839 861 0.98

17 20 0.00017 0.019 16.8 10.0 1 23 867 889 867 889 0.97

18 20 1.7e-06 0.00019 23.1 4.0 1 23 895 917 895 917 0.97

19 20 0.00067 0.075 14.9 0.3 1 23 924 946 924 946 0.96

20 20 0.039 4.4 9.3 5.1 1 23 956 978 956 978 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00011	0.012	17.4	1.5	1	23	406	428	406	428	0.96
2	20	0.0052	0.58	12.1	0.6	1	20	434	453	434	456	0.94
3	20	3.7e-05	0.0041	18.8	4.6	1	23	475	497	475	497	0.98
4	20	0.00023	0.026	16.3	4.7	1	23	503	525	503	525	0.99
5	20	4.6e-05	0.0051	18.5	5.3	1	23	531	553	531	553	0.97
6	20	9.9e-06	0.0011	20.6	7.1	1	23	559	581	559	581	0.97
7	20	8.8e-07	9.9e-05	23.9	2.9	1	23	587	609	587	609	0.97
8	20	0.00013	0.014	17.1	6.7	1	23	615	637	615	637	0.97
9	20	2.4e-05	0.0027	19.4	6.4	1	23	643	665	643	665	0.98
10	20	6e-07	6.8e-05	24.4	1.9	1	23	671	693	671	693	0.98
11	20	6.1e-05	0.0069	18.1	7.9	1	23	699	721	699	721	0.98
12	20	3.1e-05	0.0035	19.1	6.4	1	23	727	749	727	749	0.98
13	20	1.6e-05	0.0018	19.9	5.4	1	23	755	777	755	777	0.98
14	20	9.4e-06	0.0011	20.7	6.0	1	23	783	805	783	805	0.97
15	20	2.7e-05	0.003	19.2	7.1	1	23	811	833	811	833	0.97
16	20	3.8e-06	0.00042	21.9	6.0	1	23	839	861	839	861	0.98
17	20	0.00017	0.019	16.8	10.0	1	23	867	889	867	889	0.97
18	20	1.7e-06	0.00019	23.1	4.0	1	23	895	917	895	917	0.97
19	20	0.00067	0.075	14.9	0.3	1	23	924	946	924	946	0.96
20	20	0.039	4.4	9.3	5.1	1	23	956	978	956	978	0.99

Sequence Information

Coding Sequence: ATGAATCCGGAGCACCACAATATCAACACGGGTGGCGGCCAGCCCCCAGGAAATTCAGAGCAACAACAGCAGACGACCAATCTGACCCCGACGACTTCTGCCACGGACCTCCGTGTCAACTCGGCAGCAGTAAACGTCGCTTTGTCTAGCGTCGCGAAATACTGGGTGTTTACAAATTTGTTCCCGGGCCCAATACCGCAGGTGTCGGTGTACGGGCTCCCCACCGGGACAAGGATAGAAAATGGGAAACCAGTAcagGATCTTGGTCAAGCACATGCAAGCATACTCAATGGGGACCCCAATATTATACTTGGACATCCGGGACAGCCTCAAGTTACTGTCTCGGCAGCACAACAGTTACCTCAGATTATAGCTACCCAAACAACAACACATGAAGCCCTAGCCCATGCTCAACAGCAGGAGCTAGCCTCCCAGCAAGGCGCCGCTGGAACTGCCCAGGTCACAACTAATACGGGTCAAACCCACCAGCAGGTACCCAATAACCGGGTCGAGTTTGTACACCATAACATTGATATGgGTCACCACTCTCAGCAGCATATAATGCAGCAACAGCTGATGGCAGCGACCCGCCCTGAACACTCCAACCAACAGATCCAGCTAACCGTGAGTGAAGATGGCATTGTGACGGTGGTGGACCCGGGCGGGGGCAAACTTGTGGACAAGGAGGAACTACATGAGGCCATCAAAATGCCGTCAGACCACACTCTCACCGTGCATCAGTTGCAGCAAATTGTGGGGCAACAGGTGTTGGAGAATGTAGTCCGCATTGAGCAAGCGACAGGCGAACCAGCGAACATTCTCGTTACCCAAAACGCTGACGGCACCACGTCTATAGAAGCTAGCGCGGCAGACCCACTAGCAGTCGTGAAGGATGAAAAAAGCGGGTCGAAAATAGAAACGGCGCATTTCGCGTTACCTGCGGAAATAAAGGACCTAAAGGGCATCGATTTGAAGAGTGTTGGAGCGATGGGGATGGAAGGAGCCGTGGTGAAGATATCGGCCGGCGCCGCAGACCACGACATGCACGCCATGTACAAGGTCAACGTGGAGGACCTCTCGCAGCTGTTGGCGTACCACGAAGTTTTCGGCAAGCTCAATGCCGATGGACAGCCCCAAGCCAAAGTAATAGGTGAAGTGGAAGTAGAAGCGGGAACCAGCGCCGCCATGTCCGCCGAGGAGAACTCGCCCGGACACCATGCCTGTGATATTTGTGGAAAAATATTCCAATTTCGATACCAACTTATTGTTCATAGACGTTACCATGGCGAAAGAAAACCTTTCACGTGTCAAGTATGCGGTTCGGCCTTCGCGAATCCCGTCGAATTGTCGAGACACGGGAAATGTCATCTTGCAGGCGACCCAGCGGACAGGAACGCCAAAAGGTTGACCCAAGACAAGCCTTACGCGTGCACGACTTGCCATAAAACGTTTGCGCGCAAGGAGCACCTCGACAACCATGTCCGCAGCCATACCGGGGAGACCCCATACCGATGTCAATTCTGCGCAAAGACTTTCACCCGCAAGGAGCACATGGTGAACCATGTACGCAAGCATACGGGCGAGACCCCGCACCGATGTGACATCTGCAAGAAAAGCTTCACACGGAAAGAGCACTTTATGAACCACGTCATGTGGCACACAGGTGAAACGCCACACCATTGTCAAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGCCAACCATATGAGATCACATACGAATGATACCCCGTTCCGCTGCGAACTCTGTGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACCGGTGAAACCCCCCACCGATGTGACTTCTGCTCAAAGACGTTCACACGCAAGGAGCACTTACTGAACCACGTCCGGCAACACACGGGCGAGTCCCCGCACCGCTGCAACTACTGCTCCAAGTCGTTCACGCGGCGCGAGCACCTCGTCAACCACGTGCGCCAGCACACCGGCGAGACGCCCTTCCAGTGCGGCTACTGCCCCAAGGCCTTCACCCGCAAGGACCACCTAGTGAACCACGTACGCCAGCACACAGGCGAGTCCCCCCACAAGTGCTCGTTCTGCACGAAGTCGTTTACGCGCAAGGAGCACCTCACGAACCACGTGCGACAGCACACCGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCAACAACCATGTCAGACAGCACACGGGGGAAACTCCGCACAAGTGCACGTTCTGCCCGAAGGCGTACTCGCGCAAGGAGCACCTCAACAACCACATCCGACAGCATACGGGCGACGCGCCCCACTCCTGCACCTATTGCAACAAGAGCTTCTCGAGGAAGGAGCATCTTGTCAATCACGTGCGGCAACATACGGGCGAGACGCCGTTCAAATGCACGTACTGTTCGAAGTCGTTCTCTAGAAAAGAGCATCTCACGAACCACGTGCATCTGCACACCGGGGAGACACCGCACAAATGCCCCTTCTGCACCAAGACCTTCTCTCGGAAGGAGCACCTTACCAATCACGTTAGGATACACACAGGCGAGTCGCCGCACCGATGCGAGTTCTGCCACAAGACATTCACGCGGAAGGAGCACCTTACGAACCATCTCAAGCAGCACACTGGCGACACGCCGCACTCGTGTAAAGTCTGCTCCAAGGCGTTCACGCGCAAGGAACATCTTGTTGCTCATATGAGATCGCACAGTTGCGGGGAGCGACCGTACAGCTGCGGCGAGTGCGGCAAGTCGTTCCCGCTGAAGGGCAACCTGCTGTTCCACGAGCGCTCGCACAACAAGAACGGCTCCGGCGCGAGGCCCTTCCGCTGCGACGTCTGCTCCAAAGACTTCATGTGTAAAGGTCACCTGGCGTCGCACCGGCGCACGCACGCGGAGGCGGCGGCGGacggcgcgcccgccgcgcccgccgacgaCTGCGGCGACTGCGGCAAGTGCGACAAGGACCAACCCGACCAGCCCGAACGGAAACACGACATTAGacCAGCAGCGGAAAGCAGGCCAGCAGAAAACGCTGTCACACAAAACCCTCAAGCTAACGCAACTGTGATGCAAATTACTAGCCAACAAGTGCGAGCTGGTACGACGGTAGGGCTGGACGCTGCGACGAGCGGCACGTTCACCACCGCGCACCTCGCGCACGGCACCGgcgccgcgctcgcgcaccaCCCCGTCACCGTCAACTACTAA
Protein Sequence: MNPEHHNINTGGGQPPGNSEQQQQTTNLTPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKPVQDLGQAHASILNGDPNIILGHPGQPQVTVSAAQQLPQIIATQTTTHEALAHAQQQELASQQGAAGTAQVTTNTGQTHQQVPNNRVEFVHHNIDMGHHSQQHIMQQQLMAATRPEHSNQQIQLTVSEDGIVTVVDPGGGKLVDKEELHEAIKMPSDHTLTVHQLQQIVGQQVLENVVRIEQATGEPANILVTQNADGTTSIEASAADPLAVVKDEKSGSKIETAHFALPAEIKDLKGIDLKSVGAMGMEGAVVKISAGAADHDMHAMYKVNVEDLSQLLAYHEVFGKLNADGQPQAKVIGEVEVEAGTSAAMSAEENSPGHHACDICGKIFQFRYQLIVHRRYHGERKPFTCQVCGSAFANPVELSRHGKCHLAGDPADRNAKRLTQDKPYACTTCHKTFARKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLANHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLNNHVRQHTGETPHKCTFCPKAYSRKEHLNNHIRQHTGDAPHSCTYCNKSFSRKEHLVNHVRQHTGETPFKCTYCSKSFSRKEHLTNHVHLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCHKTFTRKEHLTNHLKQHTGDTPHSCKVCSKAFTRKEHLVAHMRSHSCGERPYSCGECGKSFPLKGNLLFHERSHNKNGSGARPFRCDVCSKDFMCKGHLASHRRTHAEAAADGAPAAPADDCGDCGKCDKDQPDQPERKHDIRPAAESRPAENAVTQNPQANATVMQITSQQVRAGTTVGLDAATSGTFTTAHLAHGTGAALAHHPVTVNY*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289860;
90% Identity: iTF_00680814;
80% Identity: -