Cfel030855.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Camponotus fellah
Gene Symbol
-
Assembly
GCA_030586385.1
Location
JAPIVC010000606.1:645427-647786[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00011 0.022 16.6 1.7 1 23 293 315 293 315 0.97
2 12 4.2e-05 0.0087 17.9 1.7 1 23 319 341 319 341 0.99
3 12 0.00028 0.059 15.3 2.9 1 23 346 368 346 368 0.96
4 12 0.00011 0.022 16.6 2.4 1 23 420 442 420 442 0.98
5 12 0.00085 0.18 13.8 1.4 1 23 447 469 447 469 0.97
6 12 0.00011 0.022 16.6 2.2 1 23 519 541 519 541 0.98
7 12 0.00033 0.069 15.1 0.9 2 23 549 570 548 570 0.97
8 12 1.1e-06 0.00022 22.9 2.1 1 23 580 602 580 602 0.96
9 12 0.00024 0.05 15.5 1.6 1 23 608 630 608 630 0.97
10 12 0.00017 0.036 16.0 0.7 1 23 636 658 636 658 0.98
11 12 5.1e-06 0.0011 20.8 2.0 1 23 664 686 664 686 0.96
12 12 9.1e-05 0.019 16.8 0.3 1 22 692 713 692 713 0.96

Sequence Information

Coding Sequence
ATGACTTCGGGTTACTTTGATCTGCCAATTAATATGGACAGAGTATGCAGGATTTGTCTCACCGAGGGTAATAATCTATCGCCAATCTTCTCCGCTAATCAAGATGTGAACAATTACTCAGGTCTCCCTCAAAAAATACAAGTCTGTGGTTCCATTGAGATACATGAACAGGATGGATTACCTTCTTTAATATGCGACACTTGTATTTATAACGCGACCGTTGCGCTCGAATTTAGACAGCAGTGTCAACTTTCCGATGCAAAATTACGCGCATACTATAATAAGCCTGccaaatgtaatattacgCATTCTTATACACAGACGGATTTACAAACGAGATTTCTACTATCGAAAAAGTCAGAACATATTGAAGAAGATTATTTTGTGAAACAAGACATGGAAGTGGTGGCAAATCCGCAAGAGTACATTCAGTCCACTGACTCGTTTTCCAGAGGCGAAATCAGCTTAAATACCAATCAAATTCACATGTCGGATGACAAGCTATTTATATGTTCTATCGGATTTGAAGGGAGCAAAGAGGAAGTGAAGGATTCTTGCATATCAGAGAACGAGGTTCATCAGATGACAATAGTACAGGAAGATGCGCAAGATGCATCTaacattatgaatataaataaggaTGAAACCAAGGAAGTTGATCAGTACATAGAGAAAGACAATGCAGAACAAGAAGAGTTTATTAATGAGGACATACCCAATGAGAATATCGAAGAGGAAGAGAGCATTCCGCAAAAACGTACGTCCATGAGAAAAACGAAATTGGCGTCGACCAAGACATATAGCGACGATGACCTCGGCGACAATTATTACGATGTCGAGCCGAGCAGCGACAGTCAAGATTCAGTGGAGTCGAAGTTTAAATGCAAGGTTTGTTCCAAACAATATGCTACACAAAAAGGTCTAAAGAAACATTCGCTGGTCCACGAGAAAAAGTACAAATGTAATGTCTGcttgaaaatgttttacaagCAGGAAAATATGGAGAGCCATCAGAAGATACACGCATCGAAGCCGCATGCGTGTCAACTCTGTCACGCATCATTTTCGAAACCCCAAAGCCTCGTGAGACACCTAAAATCTCACACAGAAAAGGTAAATGATATGATCAAACAGATCAATACGAACGAGCGAAAGGATAATAAGGAACCGAAGAAGGAGCTCAAGAGCGAAGACGACACTGACGACGAGACCGGACCTGCAAACGAAACGGATGAATTCGAGAACGCGCCCGAGTTGTACAAATGTGAGATTTGTAACCAGTATTGTTCATCTCTGAAGAACCTGAGGAGGCATGCCCTCGTGCACGGCGATAAAAAGTACTCGTGCACCGTATGTAAAAAATGGTTCTTCAGGCCGGATACGTTAAAGAAACACGCGGAGAAGCACGGGCACGGGTTGTTGGACAATTTGGCAGACGACAATAAGTTGTACGATTCGGATGACGACGATGTTCCCGCTAATAACACGGTGGATCCCGTGCCGGAGAGCGAGAACGtcaagagagaggagagcgaCGAGGAGGGGTCCGGGGAATACAAGTGCCAGCACTGCGACAAAGTCATGGCCACCAAAAAAGGTCTGCGACGACACGTGTCGATGCACAAACCAAAAGCTGAACCCGTGACCTGCGACGTCTGCAGAAAGGTCTGCGCCAGCCAAGCTCGTCTCATCCTCCATCAGAGAACGCACAAACCGAAGGAGAAGGTTCCGCGTGAATATCTGTGTCACATCTGCAGTAAAGTATATCCCAGCAACTCGTCCCTCACATATCACATGCGAACTCATACCGGCGTCAAGCCGCACGTGTGCAAGACGTGCAATAGCGGCttcacgacgacgacgagtcTGGCAAATCACATTCGCATTCACACGGGCGATAAGCCGTTCGTTTGTCACGTGTGCAGCGCTGCGTTTGCCGTAAGTTCGGCCTTTCGCAGACACCTAACCCGGCACACCGGCGAAGCGAATTATCTGTGCAAGACGTGCGGCAAGGCTTTTAAGCGACTCAGTACACTCAAGGAGCACACGTACACTCATTCTGGTGAGAAGCCATACGTATGCAAGACATGCGGCGCCGCGTATAGTCACAGCGGCAGCCTCTTCGCGCATCAAAAGCGTTGCCGTGCTCAATACGGCGAAATGATCGTCGAAGATCacaatcatcatcatcacaTACCGCACTCGGTCGCTCATATTCATGTGAATATGAATAACGTGAATAATGGGGCGGGAGTGCGACCAGTTGCTGTGATAGGTCAAATGTTCTAA
Protein Sequence
MTSGYFDLPINMDRVCRICLTEGNNLSPIFSANQDVNNYSGLPQKIQVCGSIEIHEQDGLPSLICDTCIYNATVALEFRQQCQLSDAKLRAYYNKPAKCNITHSYTQTDLQTRFLLSKKSEHIEEDYFVKQDMEVVANPQEYIQSTDSFSRGEISLNTNQIHMSDDKLFICSIGFEGSKEEVKDSCISENEVHQMTIVQEDAQDASNIMNINKDETKEVDQYIEKDNAEQEEFINEDIPNENIEEEESIPQKRTSMRKTKLASTKTYSDDDLGDNYYDVEPSSDSQDSVESKFKCKVCSKQYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMESHQKIHASKPHACQLCHASFSKPQSLVRHLKSHTEKVNDMIKQINTNERKDNKEPKKELKSEDDTDDETGPANETDEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDDDDVPANNTVDPVPESENVKREESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCDVCRKVCASQARLILHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVEDHNHHHHIPHSVAHIHVNMNNVNNGAGVRPVAVIGQMF