Basic Information

Insect: Harpegnathos saltator
Gene Symbol: -
Assembly: GCA_003227715.1
Location: NW:1097367-1114397[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.7e-05 0.003 17.4 1.7 1 23 307 329 307 329 0.97

2 12 2.3e-05 0.0015 18.4 1.7 1 23 333 355 333 355 0.99

3 12 0.0018 0.12 12.4 5.6 1 23 360 382 360 382 0.96

4 12 0.00022 0.014 15.3 2.3 1 23 434 456 434 456 0.98

5 12 0.00066 0.042 13.8 1.4 1 23 461 483 461 483 0.97

6 12 8.4e-05 0.0053 16.6 2.2 1 23 535 557 535 557 0.98

7 12 0.00024 0.015 15.1 0.9 2 23 565 586 564 586 0.97

8 12 8.3e-07 5.3e-05 22.9 2.1 1 23 596 618 596 618 0.96

9 12 0.00019 0.012 15.5 1.6 1 23 624 646 624 646 0.97

10 12 0.00013 0.0085 15.9 0.7 1 23 652 674 652 674 0.98

11 12 4e-06 0.00025 20.7 2.0 1 23 680 702 680 702 0.96

12 12 7.1e-05 0.0045 16.8 0.3 1 22 708 729 708 729 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.7e-05	0.003	17.4	1.7	1	23	307	329	307	329	0.97
2	12	2.3e-05	0.0015	18.4	1.7	1	23	333	355	333	355	0.99
3	12	0.0018	0.12	12.4	5.6	1	23	360	382	360	382	0.96
4	12	0.00022	0.014	15.3	2.3	1	23	434	456	434	456	0.98
5	12	0.00066	0.042	13.8	1.4	1	23	461	483	461	483	0.97
6	12	8.4e-05	0.0053	16.6	2.2	1	23	535	557	535	557	0.98
7	12	0.00024	0.015	15.1	0.9	2	23	565	586	564	586	0.97
8	12	8.3e-07	5.3e-05	22.9	2.1	1	23	596	618	596	618	0.96
9	12	0.00019	0.012	15.5	1.6	1	23	624	646	624	646	0.97
10	12	0.00013	0.0085	15.9	0.7	1	23	652	674	652	674	0.98
11	12	4e-06	0.00025	20.7	2.0	1	23	680	702	680	702	0.96
12	12	7.1e-05	0.0045	16.8	0.3	1	22	708	729	708	729	0.96

Sequence Information

Coding Sequence: ATGACTTCGGTTTATTTTGCTTTGCCGCTCAACATAGACAGAGTGTGCAGGATTTGCCTCACTGAAGGTACCAACCTGTCGCCAATCTTCTCCACTAATCAGGTGGAGAATGATTTCCAAGGAGAaaattctcttctctcccaGAAGATACAAGTCTGTGGCTCTATCGAGATACACGAACAGGATGGATTGCCTTCCCTAATATGTGACGTTTGTGCCTACAAGGCTAGAGTCGCACACGAGTTCAGGGAACAGTGTCAGAGTTCTGATGCAAAGTTGCGCATGTACTATAATAAGCCTGCTaagtgtaatattaatatcacaGATTCTTATACACAGACAGATCTGCAAACGAGGTTTGTACTGTCAACAAAGCCGAATCATCTCCAAGATGAATATTTTGTTAAGGAAGATATGCAAGTAGTAGCAAATCCACAGGAGTATGTACAACCTGCTGACCAATTTCCCAGGGATGAAACCAGTCTGAACGCCAATCAGATTCACATGCAAGATGAGAAGCTGTTCATATGCTCCATTGGATTCGAAGGGAACAAGGAGGAAGTGGTGAAGGATTCCTGCATGCCGGAGAATGTGGTTCACGAAATGTCGATAGCGCAAGAAGATGCTCAAGATACATCCAACATCATCAATATGCAAAGCAAAGACGAAATAGTGAAAGAGACGGAGCAGTATATGGAGAAGAATGGCACGGACGAACAGGAGCAATTCGTCAGTGAAAGTTTGCCCGACAATAATGTggaggaggagatggaggaagaggaagaaaacgtACGTCCACAGAAACGTACGTCCACGAGAAAAACCAAGTCAGCGCCGGCCAAGACGTACAGCGACGACGAGATCGGCGACAATTATTACGATCCGAGCAGCGACAGTCAAGATTCGGTGGAGTCGAAGTTCAAGTGCAAGATCTGCTCGAAGCAGTACGCCACGCAGAAAGGACTGAAGAAACACTCACTTGTTCATGAGAAGAAGTACAAGTGTAATGTCTGCCTGAAGATGTTCTATAAGCAAGAGAACATGGAGAACCATCAGAAAATACACGCGTCGAAACCGCACGCGTGTCAGCTTTGTCACGCGTGTTTCTCGAAACCACAGAGCCTTGTGAAGCATCTGAAGTCACACACAGAGAAGGTGAACGACATGATTAAGCAGATCAATACGGACGAACGCAAGGATAATAAGGAGCCGAAGAAAGAGTTGAAGAGCGAGGACGACACTGACGAAGAGACCGGGCCGACGAACGAGACAGACGAATTCGAGAACGCGCCCGAGTTGTACAAGTGCGAGATCTGCAGCCAGTACTGCTCATCCCTGAAAAACTTGAGGAGGCATGCTCTCGTGCACGGCGACAAGAAGTACTCGTGTACAGTATGCAAGAAATGGTTCTTCAGACCGGACACTCTGAAGAAACACGCGGAGAAGCATGGACACGGACTGCTGGATAATCTCGTGGACGATAACAAGCTGTATAActcagacgacgacgaggtggGGCCGACAAGCAACGCGGTGAATCCCTCCTTGCCGGAGAACGAGAACGTGAAGAAAGAGGACAGTGACGAAGACGGCTCCGGGGAGTATAAGTGCCAGCATTGCGACAAGGTGATGGCCACAAAAAAAGGCCTGCGCCGGCACGTGTCGATGCATAAGCCGAAGGCCGAGCCGGTGACCTGCGAGATCTGCAGGAAGGTGTGCGCGAGCCAAGCGCGACTAGTTCTCCATCAACGCACGCACAAGCCGAAAGAGAAGGTGCCGCGCGAGTATCTCTGTCACATCTGCAGCAAGGTCTACCCCAGTAACTCGTCCCTCACGTACCACATGCGCACCCACACCGGCGTCAAGCCACACGTATGCAAAACGTGCAACAGCGGCTTCACGACTACCACCAGCTTGGCGAATCACATACGCATTCACACGGGCGACAAGCCGTTCGTTTGCCATGTCTGTAGCGCCGCGTTCGCCGTGAGCTCGGCCTTCCGCAGACACCTAACTCGGCACACCGGTGAGGCGAATTACCTTTGCAAGACGTGCGGCAAGGCGTTCAAGCGGCTCAGCACCCTCAAGGAGCATACGTACACGCACTCGGGCGAGAAACCTTACGTCTGCAAGACCTGCGGCGCAGCGTATAGTCACAGTGGCAGCCTATTCGCTCACCAGAAACGTTGTCGCGCCCAGTACGGCGACATGATCGTCGacgatcatcatcatcatcacatGCCGCACACAGTCACGCATATCCACGTGAACATGAACAACGTGAATAACGGGCAGGCCGCGGTACGGCCGGTTACTGTGATAGGTCAAATATACTAA
Protein Sequence: MTSVYFALPLNIDRVCRICLTEGTNLSPIFSTNQVENDFQGENSLLSQKIQVCGSIEIHEQDGLPSLICDVCAYKARVAHEFREQCQSSDAKLRMYYNKPAKCNINITDSYTQTDLQTRFVLSTKPNHLQDEYFVKEDMQVVANPQEYVQPADQFPRDETSLNANQIHMQDEKLFICSIGFEGNKEEVVKDSCMPENVVHEMSIAQEDAQDTSNIINMQSKDEIVKETEQYMEKNGTDEQEQFVSESLPDNNVEEEMEEEEENVRPQKRTSTRKTKSAPAKTYSDDEIGDNYYDPSSDSQDSVESKFKCKICSKQYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMENHQKIHASKPHACQLCHACFSKPQSLVKHLKSHTEKVNDMIKQINTDERKDNKEPKKELKSEDDTDEETGPTNETDEFENAPELYKCEICSQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYNSDDDEVGPTSNAVNPSLPENENVKKEDSDEDGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGDMIVDDHHHHHMPHTVTHIHVNMNNVNNGQAAVRPVTVIGQIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_01087381;
80% Identity: -