Basic Information

Insect: Cataglyphis niger
Gene Symbol: -
Assembly: GCA_004329405.1
Location: SJPC01003045.1:8069-10434[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.9e-05 0.027 16.8 1.7 1 23 294 316 294 316 0.97

2 9 1.1e-05 0.0074 18.5 1.7 1 23 320 342 320 342 0.99

3 9 0.0001 0.071 15.4 2.9 1 23 347 369 347 369 0.96

4 9 4.3e-05 0.03 16.6 2.9 1 23 421 443 421 443 0.98

5 9 0.00031 0.21 13.9 1.4 1 23 448 470 448 470 0.97

6 9 3.9e-05 0.027 16.8 2.2 1 23 520 542 520 542 0.98

7 9 0.00012 0.083 15.2 0.9 2 23 550 571 549 571 0.97

8 9 3.8e-07 0.00027 23.1 2.1 1 23 581 603 581 603 0.96

9 9 8.7e-05 0.061 15.7 1.6 1 23 609 631 609 631 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.9e-05	0.027	16.8	1.7	1	23	294	316	294	316	0.97
2	9	1.1e-05	0.0074	18.5	1.7	1	23	320	342	320	342	0.99
3	9	0.0001	0.071	15.4	2.9	1	23	347	369	347	369	0.96
4	9	4.3e-05	0.03	16.6	2.9	1	23	421	443	421	443	0.98
5	9	0.00031	0.21	13.9	1.4	1	23	448	470	448	470	0.97
6	9	3.9e-05	0.027	16.8	2.2	1	23	520	542	520	542	0.98
7	9	0.00012	0.083	15.2	0.9	2	23	550	571	549	571	0.97
8	9	3.8e-07	0.00027	23.1	2.1	1	23	581	603	581	603	0.96
9	9	8.7e-05	0.061	15.7	1.6	1	23	609	631	609	631	0.97

Sequence Information

Coding Sequence: ATGACTTCGAGTTACTTTGCTTTGCCGATTAATATGGACAGAGTGTGCAGGATTTGTCTCACCGAGGGTACTAATCTATCGCCGATCTTCTCAACTAATCAGGAAGTAAACAATTTCTCAGGTCTCTCTCAGAAGATACAAGTCTGCGGTTCAATCGAGATACATGAACAGGATGGATTACCTTCTTTAATATGCGACGTTTGTATTTATAAGGCGAGCGTTGCACACGAGTTCAGACAGCAGTGTCAACATTCCGATACAAGATTACgcatgtattataataagcCTGCCAAATGTAATATCACggATTCTTACACACAGACGGATCTACAAACGAGACTTGTGCTATCGAAAAAGGCAGATCATATTGAAGAGGATTATTTTGTGAAACAAGACATGCAGGTGGTTGCAAATCCACAAGAATACATCCAATCCACCGATTCGTTTTCTAGAGGCGAAATCAATCTAAATACCAATCAAATTCATATGTCAGACGACAAGCTGTTTATATGTTCTATCGGGTTTGAAGGGAGTAAGGAGGAAGCGAAGGATTCTTGCATATCAGAGAGCGAGGTTCACCAGATGACAATTGTGCAGGAAGATGTGCAAGAAGATACATCTAACATTATGAATctacaaaataaagatgacGAGACCAAGGAAATTGATCAGTATGTAGAGAAAGACAGTACAGAACAAGAGGAGTTTGTCAGCGAGAACATACCCAATGATAATgtagaagaggaagagagcaTCCCACAAAAACGTGTGTCCATGAGAAAAACGAAATTAGCATCGACTAAGACATATAGCGATGATGAGATTGGTGACAATTATTACGAGCAGAGCAGCGACAGTCAAGATTCAGTAGAGTCAAAGTTTAAATGCAAGGTCTGTTCCAAACAATATGCCACGCAAAAAGGTTTGAAGAAGCATTCGTTGGTTCatgaaaaaaagtacaaatgcAATGTCTGCTTAAAGATGTTTTACAAACAGGAAAACATGGAGAATCATCAGAAGATACATGCGTCGAAGCCGCATGCGTGTCAACTCTGTCACGCGTCGTTCTCGAAACCCCAGAGTCTCGTGAGACACCTGAAATCTCATACAGAGAAAGTAAATGATATGATCAAGCAGATCAATACGAACGAGCGAAAGGATAATAAGGAACCGAAGAAAGAGCTCAAAAGCGAAGATGATACTGACGATGAGACTGGACCTGCGAACGAAACGGATGAATTCGAGAACGCGCCTGAGTTGTACAAATGTGAGATTTGTAATCAATATTGTTCATCTCTGAAGAATTTGAGGAGGCATGCTCTCATGCATGGCGATAAGAAATACTCGTGTACCGTATGTAAGAAATGGTTCTTCAGGCCGGATACGTTGAAGAAACACGCGGAGAAGCATGGACATGGATTATTGGATAATCTGGCGGATGACAATAAACTGTACGATTCAGATGACGATGATATGCCCGTTAATAACACAGTGGATCCCATGCCAGAGAATGAAAATGtcaagagagaggaaagtgATGAAGAGGGGTCTGGGGAGTACAAGTGTCAGCATTGTGACAAAGTCATGGCTACCAAGAAAGGTTTGCGACGGCATGTGTCAATGCACAAACCGAAGGCCGAACCCGTGACTTGCGACGTCTGCAGGAAGGTCTGCGCTAGTCAAGCTCGTCTCATTCTCCATCAAAGAACGCACAAACCGAAGGAGAAGGTGCCGCGCGAATACCTGTGTCACATTTGCAGCAAGGTATATCCAAGCAATTCATCTCTCACATATCACATGCGAACTCATACAGGCGTTAAACCACACGTGTGCAAGACATGCAATAGCGGCTTCACGACGACAACGAGTCTGGCGAATCACATTCGTATTCATACGGGCGACAAACCCGGCAGCCTCTTTGCGCATCAGAAGCGCTGCCGCGTCCAGTACGGCGAGGTGATTGTCGAcgatcataatcatcatcacataCCCCACTCGGTCGCTCATATTCACGTGAATATGAATAACGTAAATAACGGAGCAGGAGTACGACCAGTCGCTGTGATAGGTCAAATGTTCTAA
Protein Sequence: MTSSYFALPINMDRVCRICLTEGTNLSPIFSTNQEVNNFSGLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDTRLRMYYNKPAKCNITDSYTQTDLQTRLVLSKKADHIEEDYFVKQDMQVVANPQEYIQSTDSFSRGEINLNTNQIHMSDDKLFICSIGFEGSKEEAKDSCISESEVHQMTIVQEDVQEDTSNIMNLQNKDDETKEIDQYVEKDSTEQEEFVSENIPNDNVEEEESIPQKRVSMRKTKLASTKTYSDDEIGDNYYEQSSDSQDSVESKFKCKVCSKQYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMENHQKIHASKPHACQLCHASFSKPQSLVRHLKSHTEKVNDMIKQINTNERKDNKEPKKELKSEDDTDDETGPANETDEFENAPELYKCEICNQYCSSLKNLRRHALMHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDDDDMPVNNTVDPMPENENVKREESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCDVCRKVCASQARLILHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPGSLFAHQKRCRVQYGEVIVDDHNHHHIPHSVAHIHVNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: -
80% Identity: -