Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:564679-568563[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8.1e-05 0.0056 16.5 1.4 1 23 293 315 293 315 0.97

2 12 1.8e-05 0.0012 18.6 1.4 1 23 319 341 319 341 0.99

3 12 0.0004 0.028 14.3 3.9 1 23 346 368 346 368 0.96

4 12 7.5e-05 0.0052 16.6 2.4 1 23 420 442 420 442 0.98

5 12 0.0006 0.041 13.8 1.4 1 23 447 469 447 469 0.97

6 12 7.5e-05 0.0052 16.6 2.2 1 23 519 541 519 541 0.98

7 12 0.00051 0.035 14.0 1.0 2 23 549 570 548 570 0.97

8 12 7.4e-07 5.2e-05 22.9 2.1 1 23 580 602 580 602 0.96

9 12 0.00017 0.012 15.5 1.6 1 23 608 630 608 630 0.97

10 12 0.00012 0.0083 16.0 0.7 1 23 636 658 636 658 0.98

11 12 3.6e-06 0.00025 20.8 2.0 1 23 664 686 664 686 0.96

12 12 6.4e-05 0.0044 16.8 0.3 1 22 692 713 692 713 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8.1e-05	0.0056	16.5	1.4	1	23	293	315	293	315	0.97
2	12	1.8e-05	0.0012	18.6	1.4	1	23	319	341	319	341	0.99
3	12	0.0004	0.028	14.3	3.9	1	23	346	368	346	368	0.96
4	12	7.5e-05	0.0052	16.6	2.4	1	23	420	442	420	442	0.98
5	12	0.0006	0.041	13.8	1.4	1	23	447	469	447	469	0.97
6	12	7.5e-05	0.0052	16.6	2.2	1	23	519	541	519	541	0.98
7	12	0.00051	0.035	14.0	1.0	2	23	549	570	548	570	0.97
8	12	7.4e-07	5.2e-05	22.9	2.1	1	23	580	602	580	602	0.96
9	12	0.00017	0.012	15.5	1.6	1	23	608	630	608	630	0.97
10	12	0.00012	0.0083	16.0	0.7	1	23	636	658	636	658	0.98
11	12	3.6e-06	0.00025	20.8	2.0	1	23	664	686	664	686	0.96
12	12	6.4e-05	0.0044	16.8	0.3	1	22	692	713	692	713	0.96

Sequence Information

Coding Sequence: ATGACTTCGGATTATTTTACTTTACCAGTTAATATGGACAGAGTATGCAGGATCTGTCTTCAAGAGGGTACCAATTTGTCATCAATCTTCTCCTCTACACAAGAAGTAAACAATCTCATGGGTCTTTctcaaaaaatacaaatttgtgGCTCCATTGAGATAGACGAGCAGGATGGATTACCTTCCCTGATATGTAACGACTGCATTTACAAGGCCAGCGTCGCCCATGAGTTCAGACAACAGTGTCAATATTCTGATGCAAGACTACGCATGTACTACAATAAGCCTATCAAATCTATTAAGTCTACCATGGATTTGCAGGATTCTTATACACAGACAGATCTACAAACCAGATTTGTACTGTCAAAAAAGTCAGACCACTTTCAAGAGGATTATTTTAAGGAAGACATGCAAGTAGTTACGAGTGCGCAAGAGTACATTCAAACCACCGATTCATTTCCCAGAGTCAATTTGAATACCAATCAAATTCAAATACCAGATGAAAAGATATTCATCTGTTCTATCGGATTTGAAGGAAGTAAAGAAGAGGTGAAGGATTCTTGCATATCAGATAGTGAGGTTCATCAAATGACAATAGTACAGGAAGATGCACAAGATACTAACATTATCAATTTACAAAACAAGGATGACGAAATTAAGGAAGCCGATCAGTATGTGGAAAAGAATAATACAGTCCAGGAGGAGCAATTCGTGACTGAAAGTTTATCCAATGATAATATAGAAGAAGAGGAAAACGTCCCGCAAAAACGTACATCTGCGAGAAAAACAAAATCCACTAAAACGTACAGCGACGACGAGGTCATTGATAATTATTACGAGCCAAGTAGTGATAGCCAAGATTCAGTGGAGTCCAAGTTTAAGTGTAAGGTCTGTTTCAAACAATATGCAACACAGAAGGGTCTGAAGAAGCATGCTTTGGTCCacgaaaagaaatataaatgtgatatctgcttaaaaatgttttacaagCAGGAAAACATGGAGACTCATCAGAAGATTCATGCATCGAAACCGCATGCGTGTCAGCTTTGTCATGCGTCCTTCTCAAAGTCTCAGAGTCTCGTAAGGCACTTGAAGTCGCATACAGAGAAAGTAAACGATATGATTAAGCAGATCAATACAAGCGAGCGAAAGGATAATAAGGAACCGAAGAAAGAATTCAAGAGCGAAGATGATACCGACGACGAGACTGGGCCTGCGAATGAAGCGGACGAATTTGAGAACGCGCCAGAGTTGTATAAGTGCGAGATTTGCAACCAGTATTGCTCATCCTTGAAGAATCTAAGAAGACATGCCCTGGTGCATGGCGACAAGAAGTACTCTTGTACCGTATGTAAGAAATGGTTCTTCAGGCCGGATACGTTAAAGAAACACGCAGAGAAGCACGGGCATGGGCTGTTGGATAATTTGATGGATGATAATAAGCTGTACGATTCGGATGACGATGATATGCCAAGCAACAACACGATGGATCCTCCACCGGAGGGCGAAAACGTGAAGAAAGAGGAGAGCGATGAGGAAGGAACCGGTGAATACAAATGCCAACATTGCGACAAGGTCATGGCCACCAAGAAAGGTCTGCGACGCCATGTATCGATGCACAAGCCTAAGGCCGAGCCGGTTACTTGCGAGATTTGTAGGAAAGTCTGTGCAAGTCAGGCTCGTCTCGTTCTCCATCAGAAAACGCATAAGCCGAAAGAGAAGGTACCGCGCGAGTACCTGTGTCACATCTGTAGTAAGGTGTACCCAAGCAATTCATCCCTCACCTACCACATGCGAACTCACACCGGCATTAAACCACATGTGTGCAAGACATGTAACAGCGGCTTCACAACCACGACGAGCCTTGCAAATCATATTCGTATTCACACGGGCGACAAGCCGTTTGTATGTCACGTATGTAGCGCCGCATTCGCTGTGAGCTCGGCTTTTCGCAGGCATTTAACCCGGCATACTGGTGAGGCAAATTACCTATGTAAAACTTGCGGTAAGGCTTTCAAAAGGCTCAGCACGTTAAAAGAGCACACGTACACTCATTCTGGTGAGAAACCGTATGTATGCAAGACTTGCGGCGCCGCGTACAGCCACAGCGGCAGCCTCTTTGCACACCAGAAACGTTGTCGCGCCCAATACGGCGAAATGATTGTTGATGATCACAATCATCATCACATACCGCATACAATCACTCATATCCACGTAAATATGAATAACGTCAATAACGGGCAAGCAGTGCGACCAGTCGCTATGATAGGTCAAATGTTCTAA
Protein Sequence: MTSDYFTLPVNMDRVCRICLQEGTNLSSIFSSTQEVNNLMGLSQKIQICGSIEIDEQDGLPSLICNDCIYKASVAHEFRQQCQYSDARLRMYYNKPIKSIKSTMDLQDSYTQTDLQTRFVLSKKSDHFQEDYFKEDMQVVTSAQEYIQTTDSFPRVNLNTNQIQIPDEKIFICSIGFEGSKEEVKDSCISDSEVHQMTIVQEDAQDTNIINLQNKDDEIKEADQYVEKNNTVQEEQFVTESLSNDNIEEEENVPQKRTSARKTKSTKTYSDDEVIDNYYEPSSDSQDSVESKFKCKVCFKQYATQKGLKKHALVHEKKYKCDICLKMFYKQENMETHQKIHASKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKEFKSEDDTDDETGPANEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLMDDNKLYDSDDDDMPSNNTMDPPPEGENVKKEESDEEGTGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQKTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTITHIHVNMNNVNNGQAVRPVAMIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_00417770;
80% Identity: -