Tzet006626.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- -
- Assembly
- GCA_001594055.1
- Location
- NW:1697436-1701110[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.6e-05 0.0011 18.6 1.1 1 23 293 315 293 315 0.97 2 12 1.3e-05 0.00083 19.0 1.4 1 23 319 341 319 341 0.99 3 12 0.00038 0.025 14.3 3.9 1 23 346 368 346 368 0.96 4 12 7.1e-05 0.0047 16.6 2.4 1 23 420 442 420 442 0.98 5 12 0.00056 0.037 13.8 1.4 1 23 447 469 447 469 0.97 6 12 7.1e-05 0.0047 16.6 2.2 1 23 519 541 519 541 0.98 7 12 0.00021 0.013 15.2 0.9 2 23 549 570 548 570 0.97 8 12 7e-07 4.6e-05 22.9 2.1 1 23 580 602 580 602 0.96 9 12 0.00016 0.011 15.5 1.6 1 23 608 630 608 630 0.97 10 12 0.00011 0.0075 16.0 0.7 1 23 636 658 636 658 0.98 11 12 3.4e-06 0.00022 20.8 2.0 1 23 664 686 664 686 0.96 12 12 6e-05 0.004 16.8 0.3 1 22 692 713 692 713 0.96
Sequence Information
- Coding Sequence
- ATGACTTCGGATTACTTTACTTTACCAGTTAATATGGACAGAGTATGCAGGATCTGTCTTCAAGAGGGTACCAATTTGTCATCAATTTTCTCCTCTACACAAGAAGTGAACAATCTCACGGGTCTTTCTCAAAAAATACAAGTCTGTGGTTCCATCGAGATAGACGAGCAGGATGGATTACCTTCCCTGATATGTAACGACTGCATTTACAAGGCCAGCGTCGCCCATGAGTTCAGACAACAGTGTCAATACTCTGACGCAAGATTACGCATGTACTACAATAAGCCTGTCAAATCTATTAAGTCCACCATGGATTTGCAGGATTCTTATACACAGACAGATCTACAAACGAGATTTGTACAGTCAAAAAAGTCAGACCACTTTCAAGAGGATTATTTTAAGGAAGACATGCAAGTAGTTGCAAGTACACAAGAGTACATTCAAACCACTGATTCATTTCCCAGAGTCAATCTGAACACCAATCAAATTCAAATACCAGATGAAAAGTTATTCATCTGTTCTATCGGATTTGAAGGAAGTAAAGAAGAGGTGAAGGATTCTTGCATATCAGAGAGTGAGGTTCATCAAATGACAATAGTACAGGAAGATGCACAGGATACTAACATTATCAATTTACAAAACAAGGATGACGAAATTAAGGAAGCCGATCAGTATGCGGAAAAGAATAATACAGTCCAAGAGGAGCAATTCGTGAATGAAAGTTTATCCAATGATAATATAGAAGAAGAGGAAAACATCCTGCAGAAACGTACATCAGCGAGAAAAACAAAATCTGCTAAAACGTACAGCGACGACGAGGTCGTTGACAATTATTACGAACCGAGTAGTGACAGCCAAGATTCAGTGGAGTCAAAGTTTAAGTGTAAGATCTGTTCCAAACAATATGCAACACAGAAGGGTCTGAAGAAGCATGCGTTGGTCCACGAAAAGAAGTATAAGTgtgatatttgtttaaaaatgttttacaagCAGGAAAACATGGAGAATCATCAGAAGATTCATGCATCGAAACCGCATGCGTGTCAGCTTTGTCATGCGTCCTTCTCAAAGTCTCAGAGTCTCGTGAGGCACTTGAAGTCACATACAGAGAAAGTAAACGATATGATTAAGCAGATCAACACAAGCGAGCGAAAGGATAATAAAGAACCGAAGAAAGAATTCAAGAGCGAAGATGATACCGACGACGAGACTGGACCTGCGAATGAAGCGGACGAATTCGAGAATGCGCCAGAGTTGTACAAATGTGAGATTTGCAATCAGTATTGCTCATCCTTGAAGAATCTAAGAAGACATGCTCTCGTGCATGGCGACAAGAAGTATTCTTGTACCGTATGTAAGAAATGGTTCTTCAGGCCAGATACGTTGAAGAAACACGCGGAGAAGCACGGGCACGGGCTGTTGGATAATTTGATGGATGATAATAAACTGTACGATTCGGATGATGACGATATGCCGAGCAACAACACGATGGATCCTCCGCCGGAGAGTGAAAACGTTAAGAAAGAGGAGAGCGACGAGGAAGGAACCGGAGAATACAAATGCCAACACTGCGACAAGGTCATGGCCACTAAGAAAGGTCTGCGACGGCACGTATCGATGCACAAGCCTAAGGCCGAGCCGGTTACTTGCGAGATTTGTAGGAAAGTCTGTGCAAGTCAGGCTCGTCTCGTTCTCCATCAGAGAACCCATAAACCGAAAGAGAAGGTACTGCGCGAGTACCTGTGTCACATCTGCAGTAAGGTGTATCCGAGCAATTCGTCCCTCACCTACCACATGCGAACTCACACCGGCATTAAGCCACATGTGTGCAAGACATGTAACAGCGGCTTTACGACCACGACAAGTCTGGCGAATCACATTCGTATTCACACGGGCGACAAGCCGTTTGTGTGTCACGTATGTAGCGCTGCATTCGCTGTGAGCTCGGCTTTTCGCAGACATTTAACCCGACATACGGGTGAGGCAAATTACTTATGTAAAACCTGCGGTAAGGCTTTCAAGAGGCTCAGCACGTTAAAGGAGCACACGTACACTCATTCTGGTGAGAAACCGTACGTATGCAAGACGTGCGGCGCCGCGTACAGCCACAGTGGCAGCCTCTTTGCACACCAGAAGCGTTGTCGCGCCCAATACGGCGAGATGATTGTTGATGATCACAATCATCATCACATACCGCATACAATCACTCATATCCACGTAAATATGAATAACGTCAATAACGGGCAAGCAGTGCGACCGGTCGCTATGATAGGTCAAATgttctaa
- Protein Sequence
- MTSDYFTLPVNMDRVCRICLQEGTNLSSIFSSTQEVNNLTGLSQKIQVCGSIEIDEQDGLPSLICNDCIYKASVAHEFRQQCQYSDARLRMYYNKPVKSIKSTMDLQDSYTQTDLQTRFVQSKKSDHFQEDYFKEDMQVVASTQEYIQTTDSFPRVNLNTNQIQIPDEKLFICSIGFEGSKEEVKDSCISESEVHQMTIVQEDAQDTNIINLQNKDDEIKEADQYAEKNNTVQEEQFVNESLSNDNIEEEENILQKRTSARKTKSAKTYSDDEVVDNYYEPSSDSQDSVESKFKCKICSKQYATQKGLKKHALVHEKKYKCDICLKMFYKQENMENHQKIHASKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKEFKSEDDTDDETGPANEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLMDDNKLYDSDDDDMPSNNTMDPPPESENVKKEESDEEGTGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVLREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTITHIHVNMNNVNNGQAVRPVAMIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00264473;
- 90% Identity
- iTF_00417770;
- 80% Identity
- -