Basic Information

Insect: Solenopsis invicta
Gene Symbol: Prdm15
Assembly: GCA_016802725.1
Location: NC:25261809-25267169[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.3e-06 0.00082 19.4 1.4 1 23 293 315 293 315 0.98

2 12 2.2e-05 0.0019 18.2 1.3 1 23 319 341 319 341 0.99

3 12 0.00037 0.033 14.3 3.9 1 23 346 368 346 368 0.96

4 12 0.00031 0.027 14.6 4.3 1 23 420 442 420 442 0.98

5 12 0.00055 0.049 13.8 1.4 1 23 447 469 447 469 0.97

6 12 7e-05 0.0061 16.6 2.2 1 23 519 541 519 541 0.98

7 12 0.0002 0.018 15.2 0.9 2 23 549 570 548 570 0.97

8 12 6.9e-07 6.1e-05 22.9 2.1 1 23 580 602 580 602 0.96

9 12 0.00016 0.014 15.5 1.6 1 23 608 630 608 630 0.97

10 12 0.00011 0.0098 16.0 0.7 1 23 636 658 636 658 0.98

11 12 3.3e-06 0.00029 20.8 2.0 1 23 664 686 664 686 0.96

12 12 5.9e-05 0.0052 16.8 0.3 1 22 692 713 692 713 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.3e-06	0.00082	19.4	1.4	1	23	293	315	293	315	0.98
2	12	2.2e-05	0.0019	18.2	1.3	1	23	319	341	319	341	0.99
3	12	0.00037	0.033	14.3	3.9	1	23	346	368	346	368	0.96
4	12	0.00031	0.027	14.6	4.3	1	23	420	442	420	442	0.98
5	12	0.00055	0.049	13.8	1.4	1	23	447	469	447	469	0.97
6	12	7e-05	0.0061	16.6	2.2	1	23	519	541	519	541	0.98
7	12	0.0002	0.018	15.2	0.9	2	23	549	570	548	570	0.97
8	12	6.9e-07	6.1e-05	22.9	2.1	1	23	580	602	580	602	0.96
9	12	0.00016	0.014	15.5	1.6	1	23	608	630	608	630	0.97
10	12	0.00011	0.0098	16.0	0.7	1	23	636	658	636	658	0.98
11	12	3.3e-06	0.00029	20.8	2.0	1	23	664	686	664	686	0.96
12	12	5.9e-05	0.0052	16.8	0.3	1	22	692	713	692	713	0.96

Sequence Information

Coding Sequence: ATGACTTCGGATTACTTTACTTTGCCAATTAATATGGACAGAGTATGCAGGATCTGTCTTACTGAGGCTACCAATTTGTCATCAATTTTCTCACCTCAGAAAGAATCCCTAACAGTCAATGATCTCATGGATCTTTCTCAAAAAATACAAGTTTGTGGCTCTATCGAGCTACACGAGCAGGATGGATTGCCTTCCCTGATTTGCGACGTTTGTATTTATAGGGCCACTATCGCCCATGAGTTTAGGCAGCAGTGTCAACACTCTGATGCAAAGTTGCGCATGTACTACAATAAGCCTGCCAAGTGCATTAAGTCTGCCACAGATTCTTGTACACAGACAGATCTACAAAATGTGCTGTCGAAAAAGTCGGACCCCTTCCAGgaggattattttgtaaaagagaACATGCAGGTGGTTGCGAGTGCACAGGAGTACAGTCAAGCCACTGATTCGTTTCCCAGAAGCGAAATCAATCTGAATACCAATCAAATTCAAATGTCAGACGAGAAGCTATTTATTTGTTCCATTGGATTTGAAGGGACTAAAGAGGATGAGAAGGATTCTTGCATATCAGAGGTTCATCAAATGACGATAGTGCAGGAGGATGTACCAGATACATCTAACATTATCAATTTACAAAACAAGGATGACGATATTAAGGAAACCGATcaatatgtagaaaaaaataatacagatcAGGAGGATCAGCAGTTTGTCAATGAAAGCTTATCTAATGATAATGTAAAAGAGGAAAGCGTTCCTCAGAAACGTACGTCTACGAGAAAGACGAAATCAGCTAAAACTTACAGCGACGACGAAATCGCAGACAATTATTACGAGCCAAGCAGCGACAGTCAAGATTCAGTGGAGACGAAATTTAAGTGCAAAGTCTGCTCCAAGCAATATGCTACGCAGAAAGGTTTGAAGAAACATTTGTTGGTACACGAAAAGAAATATAAGTGCGACGTCTGCCTAAAGATGTTTTATAAGCAGGAAAACATGGAGAATCATCAGAAGATTCACACGTCGAAGCCGCACGCGTGTCAACTTTGTCATGCGTCCTTTTCCAAGTCTCAAAGTCTCGTGAGACATTTGAAGTCACATACAGAGAAAGTAAACGATATGATTAAGCAGATCAATACGAGCGAGCGAAAGGATAATAAAGAACCGAAGAAAGAGCTCAAGAGCGAAGGCGATACCGATGACGAAACTGGGCCTGCGAATGAAGCAGACGAGTTCGAGAACGCGCCCGAATTATATAAATGCGAGACTTGCAATCAATACTGTTCATCTTTAAAGAATCTAAGAAGACATACTCTCGTGCATGGCGATAAGAAATACTCTTGCACAGTATGTAAGAAATGGTTTTTCAGGCCGGACACGTTGAAGAAACACGCGGAGAAGCATGGACATGGGCTGCTGGATAACTTGGTGGACGATAACAAGTTGTACGATTCGGACGACGACGAAATGCCGAACAGTAATACGATGAGTGCCACGCCAGAGAGCGAGAACGTAAAAAAAGAGGAGAGTGACGAGGAAGGATCCGGAGAATACAAGTGTCAGCACTGCGACAAAGTCATGGCCACTAAGAAAGGTCTGCGACGGCACGTGTCGATGCACAAGCCGAAGGCCGAGCCCGTTACCTGCGAGATCTGTAGGAAAGTTTGTGCTAGTCAGGCTCGTCTCGTTCTCCATCAGAGAACGCACAAACCGAAAGAGAAAGTGCCGCGCGAATACCTATGTCACATCTGCAGTAAGGTATACCCGAGCAATTCGTCTCTCACCTATCACATGCGAACTCACACCGGTATTAAGCCACATGTATGCAAGACGTGTAACAGCGGCTTCACGACTACGACGAGCCTGGCGAATCACATTCGCATTCACACAGGCGACAAGCCGTTTGTCTGTCACGTGTGTAGTGCCGCGTTTGCTGTGAGCTCGGCTTTTCGTAGGCATTTAACTCGACATACCGGCGAAGCAAATTATCTGTGCAAAACTTGCGGCAAGGCTTTCAAGAGGCTCAGTACATTGAAGGAGCACACGTATACCCATTCCGGCGAGAAACCATACGTGTGCAAGACATGCGGTGCCGCGTATAGCCACAGCGGCAGCCTCTTTGCACATCAGAAGCGCTGCCGTGCCCAGTACGGTGAGATGATTGTTGATGATCACAATCATCATCACATACCGCACACAGTCACTCATATTCACGTGAATATGAATAACGTGAATAATGGAGCGGGAGTGCGACCAGTCGCTGTGATAggtcaaatgttttaa
Protein Sequence: MTSDYFTLPINMDRVCRICLTEATNLSSIFSPQKESLTVNDLMDLSQKIQVCGSIELHEQDGLPSLICDVCIYRATIAHEFRQQCQHSDAKLRMYYNKPAKCIKSATDSCTQTDLQNVLSKKSDPFQEDYFVKENMQVVASAQEYSQATDSFPRSEINLNTNQIQMSDEKLFICSIGFEGTKEDEKDSCISEVHQMTIVQEDVPDTSNIINLQNKDDDIKETDQYVEKNNTDQEDQQFVNESLSNDNVKEESVPQKRTSTRKTKSAKTYSDDEIADNYYEPSSDSQDSVETKFKCKVCSKQYATQKGLKKHLLVHEKKYKCDVCLKMFYKQENMENHQKIHTSKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKELKSEGDTDDETGPANEADEFENAPELYKCETCNQYCSSLKNLRRHTLVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYDSDDDEMPNSNTMSATPESENVKKEESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTVTHIHVNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_01405955;
80% Identity: -