Basic Information

Insect: Formica aserva
Gene Symbol: -
Assembly: GCA_037039905.1
Location: JAXRKO010000002.1:3079990-3082355[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00011 0.023 16.6 1.7 1 23 293 315 293 315 0.97

2 12 3.1e-05 0.0062 18.4 1.7 1 23 319 341 319 341 0.99

3 12 0.00052 0.1 14.5 3.0 1 23 346 368 346 368 0.96

4 12 0.00011 0.023 16.6 2.4 1 23 420 442 420 442 0.98

5 12 0.0009 0.18 13.8 1.4 1 23 447 469 447 469 0.97

6 12 0.00011 0.023 16.6 2.2 1 23 519 541 519 541 0.98

7 12 0.00035 0.07 15.1 0.9 2 23 549 570 548 570 0.97

8 12 1.1e-06 0.00022 22.9 2.1 1 23 580 602 580 602 0.96

9 12 0.00026 0.051 15.5 1.6 1 23 608 630 608 630 0.97

10 12 0.00018 0.036 16.0 0.7 1 23 636 658 636 658 0.98

11 12 5.4e-06 0.0011 20.8 2.0 1 23 664 686 664 686 0.96

12 12 9.6e-05 0.019 16.8 0.3 1 22 692 713 692 713 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00011	0.023	16.6	1.7	1	23	293	315	293	315	0.97
2	12	3.1e-05	0.0062	18.4	1.7	1	23	319	341	319	341	0.99
3	12	0.00052	0.1	14.5	3.0	1	23	346	368	346	368	0.96
4	12	0.00011	0.023	16.6	2.4	1	23	420	442	420	442	0.98
5	12	0.0009	0.18	13.8	1.4	1	23	447	469	447	469	0.97
6	12	0.00011	0.023	16.6	2.2	1	23	519	541	519	541	0.98
7	12	0.00035	0.07	15.1	0.9	2	23	549	570	548	570	0.97
8	12	1.1e-06	0.00022	22.9	2.1	1	23	580	602	580	602	0.96
9	12	0.00026	0.051	15.5	1.6	1	23	608	630	608	630	0.97
10	12	0.00018	0.036	16.0	0.7	1	23	636	658	636	658	0.98
11	12	5.4e-06	0.0011	20.8	2.0	1	23	664	686	664	686	0.96
12	12	9.6e-05	0.019	16.8	0.3	1	22	692	713	692	713	0.96

Sequence Information

Coding Sequence: ATGACTTCGGGTTACTTTGCTTTGCCAATTAATATGGACAGAGTGTGCAGGATTTGTCTCACCGAGGGTACTAATCTATCGCCGATCTTCTCAGCTAATCAGGAAGTAAACAATTTCTCAGGTCTCTCTCAGAAGATACAAGTCTGCGGTTCAATTGAGATACATGAACAGGATGGATTACCTTCTTTAATATGCGACGTTTGTATTTATAAGGCGAGCGTTGCGCACGAATTCAGACAGCAGTGTCAACATTCCGATACAAGATTACGCATGTACTATAATAAGCCTGCTAAATGTAATATCACGGATTCTTACACACAGACGGATCTACAAACGAGATTTGTGCTATCGAAAAAGGCAGATCATATTGAAGAGgattattttgtgaaacaagACATGCAGGTCGTCGCAAATCCACAAGAATATATCCAATCCACTGACTCGTTTTCCAGAGGCGAAATCAGTCTAAATACCAATCAAATTCATATGTCAGACGACAAGCTGTTTATATGTTCTATTGGATTTGAAGGGAGTAAGGAGGAAGCGAAGGATTCTTGCATATCAGAGAACGAGGTTCACCAGATGACAATTGTGCAGGAAGACGCACAGGAAGATGCGTCTAACATTATGAATCTACAAAATAAAGATGACGAGATCAAGGAAGTTGAACAGTATGTAGAGAAGGACAGTACAGAACAGGAGGATTTTGTCAGCGAGAACTTACCCAATGATgtggaagaggaagagagcaTCCCGCAAAAACGTATGTCCATGAGAAAAACGAAATTGGCATCGATTAAGACATATAGCGATGACGAGATTGGCGATAATTATTACGAGCCGAGCAGCGACAGTCAAGATTCAATGGAGTCAAAGTTTAAATGCAAGGTCTGTTCCAAACAATATGCCACGCAAAAAGGTCTGAAGAAGCATTCGCTGGTCCACGAGAAAAAGTACAAATGCAACGTCTGCTTAAAGATGTTTTACAAACAGGAAAATATGGAGAACCATCAGAAGATACACACGTCGAAGCCGCACGCGTGTCAACTCTGTCACGCGTCATTCTCGAAAGCTCAAAGTCTCGTGAGACACCTGAAATCTCATACAGAGAAGGTAAATGATATGATCAAACAGATCAATACGAACGAGCGAAAGGATAATAAGGAACCGAAGAAAGAGCTCAAGAGTGAAGACGACACTGACGACGAGACTGGGCCTGCGAATGAAACAGATGAATTTGAGAACGCGCCCGAGTTGTATAAATGTGAGATTTGTAATCAATATTGTTCGTCTCTGAAAAACTTGAGGAGGCATGCCCTCGTGCACGGCGATAAGAAATATTCGTGCACCGTATGTAAGAAATGGTTCTTCAGGCCGGATACGTTGAAGAAACACGCGGAGAAGCATGGACACGGATTATTGGATAATCTGGCGGATGACAATAAGCTGTACGATTCGGATGACGACGATATGCCCGTTAATAACACAGTGGATCCTGTGCCAGAGAGCGAAAACGTCAAGAGAGAGGAGAGTGACGAGGAGGGGTCCGGAGAGTACAAATGCCAGCACTGTGACAAAGTCATGGCCACCAAGAAAGGTCTGCGACGGCACGTGTCAATGCACAAGCCGAAGGCTGAACCAGTGACCTGTGACGTCTGCAGGAAGGTCTGCGCTAGTCAGGCTCGTCTCATCCTCCATCAGAGAACGCACAAACCAAAGGAGAAGGTGCCGCGCGAATACCTGTGTCACATCTGCAGCAAGGTGTATCCAAGCAATTCATCCCTCACATATCACATGCGAACTCACACCGGCGTTAAGCCGCACGTGTGCAAGACGTGCAATAGCGGCttcacgacgacgacgagtcTGGCGAATCACATTCGTATTCATACGGGCGACAAGCCGTTCGTCTGTCACGTATGTAGTGCCGCATTCGCCGTGAGTTCGGCTTTTCGCAGACACCTGACTCGGCACACCGGCGAGGCAAATTATTTGTGTAAAACGTGCGGCAAAGCCTTCAAGCGGCTCAGCACGCTGAAGGAGCACACATACACCCATTCTGGCGAGAAGCCGTATGTGTGCAAGACATGCGGCGCCGCGTACAGCCACAGCGGTAGCCTCTTCGCGCATCAGAAGCGCTGCCGCGTCCAGTACGGCGAGGTGATTGTCGACGATCATAATCATCATCATCACATACCCCACTCGGTCGCTCATATTCACGTGAATATGAATAACGTGAATAATGGAGCAGGAGTGCGACCGGTCGCTGTGATAGGTCAAATGTTCTAA
Protein Sequence: MTSGYFALPINMDRVCRICLTEGTNLSPIFSANQEVNNFSGLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDTRLRMYYNKPAKCNITDSYTQTDLQTRFVLSKKADHIEEDYFVKQDMQVVANPQEYIQSTDSFSRGEISLNTNQIHMSDDKLFICSIGFEGSKEEAKDSCISENEVHQMTIVQEDAQEDASNIMNLQNKDDEIKEVEQYVEKDSTEQEDFVSENLPNDVEEEESIPQKRMSMRKTKLASIKTYSDDEIGDNYYEPSSDSQDSMESKFKCKVCSKQYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMENHQKIHTSKPHACQLCHASFSKAQSLVRHLKSHTEKVNDMIKQINTNERKDNKEPKKELKSEDDTDDETGPANETDEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDDDDMPVNNTVDPVPESENVKREESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCDVCRKVCASQARLILHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEVIVDDHNHHHHIPHSVAHIHVNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_00280113;
80% Identity: -