Basic Information

Insect: Lasius niger
Gene Symbol: -
Assembly: GCA_001045655.1
Location: LBMM01004146.1:1001-6867[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 7.4e-05 0.0079 16.6 1.7 1 23 294 316 294 316 0.97

2 12 2e-05 0.0022 18.4 1.7 1 23 320 342 320 342 0.99

3 12 0.00019 0.021 15.3 2.9 1 23 347 369 347 369 0.96

4 12 7.3e-05 0.0079 16.6 2.4 1 23 421 443 421 443 0.98

5 12 0.00058 0.063 13.8 1.4 1 23 448 470 448 470 0.97

6 12 7.3e-05 0.0079 16.6 2.2 1 23 521 543 521 543 0.98

7 12 0.00023 0.024 15.1 0.9 2 23 551 572 550 572 0.97

8 12 7.3e-07 7.8e-05 22.9 2.1 1 23 582 604 582 604 0.96

9 12 0.00017 0.018 15.5 1.6 1 23 610 632 610 632 0.97

10 12 0.00012 0.013 16.0 0.7 1 23 638 660 638 660 0.98

11 12 3.5e-06 0.00037 20.8 2.0 1 23 666 688 666 688 0.96

12 12 5.4e-05 0.0058 17.0 0.3 1 22 694 715 694 715 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	7.4e-05	0.0079	16.6	1.7	1	23	294	316	294	316	0.97
2	12	2e-05	0.0022	18.4	1.7	1	23	320	342	320	342	0.99
3	12	0.00019	0.021	15.3	2.9	1	23	347	369	347	369	0.96
4	12	7.3e-05	0.0079	16.6	2.4	1	23	421	443	421	443	0.98
5	12	0.00058	0.063	13.8	1.4	1	23	448	470	448	470	0.97
6	12	7.3e-05	0.0079	16.6	2.2	1	23	521	543	521	543	0.98
7	12	0.00023	0.024	15.1	0.9	2	23	551	572	550	572	0.97
8	12	7.3e-07	7.8e-05	22.9	2.1	1	23	582	604	582	604	0.96
9	12	0.00017	0.018	15.5	1.6	1	23	610	632	610	632	0.97
10	12	0.00012	0.013	16.0	0.7	1	23	638	660	638	660	0.98
11	12	3.5e-06	0.00037	20.8	2.0	1	23	666	688	666	688	0.96
12	12	5.4e-05	0.0058	17.0	0.3	1	22	694	715	694	715	0.96

Sequence Information

Coding Sequence: ATGACTTCGGGTTACTTTGCTTTGCCGATTAATATGGACAGAGTGTGCAGGATTTGTCTCACCGAAGGTACCAATCTATCGCCGATCTTCTCCGCTAATCAAGAAGTAAACGATTTCTCAGGTCTCTCTCAAAAAATACAAGTCTGCGGTTCCATCGAGATACACGAACAGGACGGATTACCTTCTTTGATATGCGACGTTTGTATTTATAAGGCCAGCGTTGCGCACGAGTTCAGACAGCAGTGTCAACATTCCGATGCAAGATTACGCATGTACTATAATAAGCCTGCCAAATGTAATATCACGgattcttACACACAGACGGATCTACAAACGAGATTTGTACTATCGAAAAAGCCAGATCATATTCAAGAGGATTATTTTGTGAAACAAGACATGCAGGTGGTCGCAAATCCACAAGAGTACATTCAATCCACCGATTCGTTTTCCAGAGGCGAGATCAATTTAAATACCAATCAAATTCATATGTCAGATGATAAGCTGTTTATATGTTCTATCGGATTTGAAGGGAGTAAAGAGGAAGCGAAGGATTCCTGCATGTCAGAGAGCGAGGTTCATCAGATGACAATAGTGCAGGAAGACGCGCAGGAGGATGCGTCCAACATTATGAATCTACAAAATAAAGATGACGAGACCAAGGAAGTTGATCAGTACATAGAGAAAGACAGTACGGAACAGGAGGAGTTTGTCAGTGAGAACTTGCCCAATGATAAtgtggaagaggaagagagcaTCCCGCAAAAACGTACGTCGATGAGAAAAACGAAATTGGCATCGACTAAGACATACAGCGATGACGAGATCGGCGACAATTATTACGAGCCGAGCAGCGACAGTCAAGATTCCGTGGTGTCGAAATTCAAATGTAAGGTCTGTTCCAAACAATACGCCACGCAAAAAGGTCTGAAGAAGCATTCGCTGGTCCATGAGAAAAAGTACAAATGTAACGTCTGCTTAAAGATGTTTTACAAGCAGGAGAATATGGAGAATCATCAGAAGATACACGCGTCGAAGCCGCACGCGTGTCAACTCTGTCACGCGTCATTCTCGAAACCCCAGAGCCTCGTGAGACACCTGAAATCTCACACAGAGAAGGTAAATGATATGATCAAGCAGATCAATACGAACGAGCGGAAGGATAGTAAGGAACCGAAGAAGGAGCTCAAGAGCGAAGACGACACCGACGACGAGACCGGGCCTGCGAACGAAACGGACGAATTCGAGAACGCGCCCGAGTTGTACAAATGTGAGATTTGCAACCAATATTGTTCGTCTCTGAAGAACCTGAGGAGGCACGCCCTCGTGCACGGCGACAAGAAGTACTCGTGCACCGTATGTAAGAAATGGTTCTTCAGGCCGGACACGTTGAAGAAACACGCGGAGAAGCACGGACACGGATTGTTGGACAATCTGGCGGACGACAATAAGCTGTACGattccgacgacgacgatatgCCAGCTAACAACACGGTGGATCCCGTGCCGGAGAGCGAGAACGTCAAGAAAGAGGAGAGCGACGAGGAGGGAGGATCCGGAGAGTACAAGTGCCAGCACTGCGACAAAGTCATGGCCACGAAGAAGGGTCTGCGACGCCACGTGTCGATGCACAAACCGAAGGCCGAACCCGTGACCTGCGACGTCTGCAGGAAGGTCTGCGCCAGTCAGGCACGTCTCATCCTTCATCAGAGAACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAATATCTGTGTCACATCTGCAGCAAGGTGTATCCGAGCAATTCGTCCCTCACGTATCACATGCGAACCCACACCGGCGTCAAGCCGCACGTGTGCAAGACGTGCAACAGCGGCttcacgacgacgacgagtctGGCGAATCACATTCGCATTCACACGGGCGACAAGCCGTTCGTCTGTCACGTGTGCTCGGCCGCGTTCGCCGTGAGTTCGGCCTTTCGCAGACACTTGACCCGGCACACCGGCGAGGCGAATTATCTCTGCAAGACCTGCGGCAAGGCCTTCAAGCGGCTCAGCACCCTGAAGGAGCACACGTACACCCATTCCGGTGAGAAACCGTACGTGTGCAAGAATTGCGGCGCCGCGTACAGCCACAGCGGCAGCCTGTTCGCGCATCAGAAGCGCTGCCGCGCCCAGTACGGCAGCGAGATGATCGTCGACGATCacaatcatcatcatcatcacatACCGCACTCGGTCGCTCATATTCACGTGAATATGAATAACGTGAATAACGCAGCGGGAGTGCGACCGGTCGCTGTGCTAGGTCAAATGTTTTAA
Protein Sequence: MTSGYFALPINMDRVCRICLTEGTNLSPIFSANQEVNDFSGLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKCNITDSYTQTDLQTRFVLSKKPDHIQEDYFVKQDMQVVANPQEYIQSTDSFSRGEINLNTNQIHMSDDKLFICSIGFEGSKEEAKDSCMSESEVHQMTIVQEDAQEDASNIMNLQNKDDETKEVDQYIEKDSTEQEEFVSENLPNDNVEEEESIPQKRTSMRKTKLASTKTYSDDEIGDNYYEPSSDSQDSVVSKFKCKVCSKQYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMENHQKIHASKPHACQLCHASFSKPQSLVRHLKSHTEKVNDMIKQINTNERKDSKEPKKELKSEDDTDDETGPANETDEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDDDDMPANNTVDPVPESENVKKEESDEEGGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCDVCRKVCASQARLILHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKNCGAAYSHSGSLFAHQKRCRAQYGSEMIVDDHNHHHHHIPHSVAHIHVNMNNVNNAAGVRPVAVLGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_00280113;
80% Identity: -