Basic Information

Insect: Vollenhovia emeryi
Gene Symbol: -
Assembly: GCA_000949405.1
Location: NW:412502-418516[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 8e-05 0.0062 16.5 1.7 1 23 328 350 328 350 0.97

2 12 0.00014 0.011 15.8 1.5 1 23 354 376 354 376 0.99

3 12 0.00043 0.033 14.3 3.9 1 23 381 403 381 403 0.96

4 12 8e-05 0.0061 16.6 2.4 1 23 455 477 455 477 0.98

5 12 0.00063 0.049 13.7 1.4 1 23 482 504 482 504 0.97

6 12 8e-05 0.0061 16.6 2.2 1 23 553 575 553 575 0.98

7 12 0.00023 0.018 15.1 0.9 2 23 583 604 582 604 0.97

8 12 7.9e-07 6.1e-05 22.9 2.1 1 23 614 636 614 636 0.96

9 12 0.00018 0.014 15.4 1.6 1 23 642 664 642 664 0.97

10 12 0.00013 0.0098 15.9 0.7 1 23 670 692 670 692 0.98

11 12 3.8e-06 0.00029 20.7 2.0 1 23 698 720 698 720 0.96

12 12 6.8e-05 0.0052 16.8 0.3 1 22 726 747 726 747 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	8e-05	0.0062	16.5	1.7	1	23	328	350	328	350	0.97
2	12	0.00014	0.011	15.8	1.5	1	23	354	376	354	376	0.99
3	12	0.00043	0.033	14.3	3.9	1	23	381	403	381	403	0.96
4	12	8e-05	0.0061	16.6	2.4	1	23	455	477	455	477	0.98
5	12	0.00063	0.049	13.7	1.4	1	23	482	504	482	504	0.97
6	12	8e-05	0.0061	16.6	2.2	1	23	553	575	553	575	0.98
7	12	0.00023	0.018	15.1	0.9	2	23	583	604	582	604	0.97
8	12	7.9e-07	6.1e-05	22.9	2.1	1	23	614	636	614	636	0.96
9	12	0.00018	0.014	15.4	1.6	1	23	642	664	642	664	0.97
10	12	0.00013	0.0098	15.9	0.7	1	23	670	692	670	692	0.98
11	12	3.8e-06	0.00029	20.7	2.0	1	23	698	720	698	720	0.96
12	12	6.8e-05	0.0052	16.8	0.3	1	22	726	747	726	747	0.96

Sequence Information

Coding Sequence: ATGTCTGTATTGCTAACTTTATTAGGCGGCAAACATAATCTAATCGCAGGTGAACATTTTGTCGTCGGCACGATGACTTCGGGTTACTTCACTCTGCCGATTAATATGGACAGGGTGTGCAGGATCTGTCTCACCGAGGGCACCAATTTGTCGTCGATCTTCTCCGCCACTCAGGAAGTGAACGATCTCACGGTCCTCTCGCAGAAGATACAAGTTTGCGGCTCCATCGAGATACACGAGCAGGACGGGCTGCCCTCCCTGATATGCGACGTCTGCATTTACAAGGCCAGCGTCGCCCACGAGTTCAGGCAGCAGTGCCAACACTCGGACGCGAGGCTGCGCATGTACTACAACAAGCCCGCTAAATGTGTCAAGTCCGACGCGGATCTCCAGGATTCGTACACGCAGACGGACCTGCAAACGAAATTTGTCTTCTCGAAAAAGTCGGACCACTTCCAGGAGGATTACACCTTCGCGAAGGAGGACATGCAGGTGGTTGCGAGCGCGCAAGAGTACATTGAAGCCGCCGACTCGTTCCCCAGGAGCGAAGTCGGCCTGAACGCCAGTCAGATTCAAATGTCGGACGAAAAGCTGTTCATCTGCTCCATCGGATTCGAAGGTGGTAAAGAGGAGGGGAAGGATTCCTGCATGTCGGAGAACGAGGTCCACCAGATGACGATAACGCAGGGAGACGTGCAAGATGCGTCTAACATGATCGGCTTGCAAAGCAAGGAGGACGGCGTCAAGGAGGCCGATCACTACGCGGAGAAGAACAGTGCGGATCAggaggagcagcagcagcagcagttcGTCAGCGAGAGCCTACCTAACGATAAcgtggaagaggaggagagcgTGCCGCAGAAACGTACGTCCGCGAGGAAGACTAAATCGGCAGCCGCGAAAACGTACAGCGACGACGAGATCGCCGACAATTATTACGAGCCGAGCAGCGACAGTCAGGATTCCACGGTGTCGAAGTTTAAATGTAAAGTCTGCTCCAAGCAATACGCCACGCAGAAGGGTCTGAAGAAGCACTCGTTGGTACACGAGAAGAAGTACAAGTGCGACGTCTGCatgaaaatgttttacaaaCAGGAGAACATGGAGAACCATCAGAAGATTCACGCGTCGAAGCCGCACGCGTGCCAGCTCTGCCACGCGTCCTTCTCCAAGTCTCAAAGTCTCGTGAGACACTTGAAGTCGCACACGGAGAAGGTGAACGATATGATCAAGCAGATCAACACGAGCGAGCGCAAGGACGGCAAGGAGCCGAAGAAGGAGCTCAAGAGCGAGGACGACACCGACGACGAGACCGGGCCCGCCAACGAAGCGGACGAATTCGAGAACGCGCCCGAGTTGTACAAATGCGAGATTTGCAACCAATATTGCTCGTCCTTGAAGAACCTGAGGAGACACGCCCTCGTGCACGGCGACAAGAAGTACTCCTGCACCGTGTGTAAGAAGTGGTTTTTCAGGCCGGACACGTTGAAGAAACACGCGGAGAAGCACGGGCACGGGCTGCTGGACAATCTGATGGACGACAACAAGCTGTACGATtcggacgacgacgacatgCCGGGCAACACGATGGATCCCCCGCCGGAGAGCGAGAACGTCAAGAAGGAGGAGAGCGACGAGGAGGGATCCGGGGAGTACAAGTGCCAGCACTGCGACAAGGTCATGGCCACCAAGAAGGGCCTGCGACGGCACGTGTCGATGCACAAGCCGAAGGCCGAGCCAGTCACCTGCGAGATCTGCAGGAAGGTCTGCGCCAGCCAGGCGCGTCTCGTTCTCCATCAGAGGACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAATACCTGTGCCACATCTGCAGCAAGGTGTACCCCAGCAACTCGTCCCTCACCTATCACATGCGGACCCACACCGGCGTCAAGCCGCACGTGTGCAAGACCTGCAACAGCGGCTTCACGACCACGACGAGCCTGGCGAACCACATTCGCATTCATACGGGCGACAAGCCGTTCGTCTGTCACGTGTGTAGCGCCGCGTTCGCCGTGAGCTCGGCCTTCCGCAGGCACCTGACCCGGCACACCGGCGAGGCCAACTACCTGTGCAAGACCTGCGGCAAGGCCTTCAAGAGGCTCAGCACGCTCAAGGAGCACACGTACACCCATTCCGGCGAGAAGCCGTACGTGTGCAAGACGTGCGGCGCCGCGTACAGCCACAGCGGCAGCCTGTTCGCGCACCAGAAACGCTGCCGCGCCCAGTACGGCGAGATGATCGTCGACGACCACAATCATCATCACATACCGCACACGGTCACTCACATCCACGTGAATATGAACAACGTCAACAACGGGGCGGGGGTGCGACCGGTCGCTGTGGTGGGCCAGATGTTCTAA
Protein Sequence: MSVLLTLLGGKHNLIAGEHFVVGTMTSGYFTLPINMDRVCRICLTEGTNLSSIFSATQEVNDLTVLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKCVKSDADLQDSYTQTDLQTKFVFSKKSDHFQEDYTFAKEDMQVVASAQEYIEAADSFPRSEVGLNASQIQMSDEKLFICSIGFEGGKEEGKDSCMSENEVHQMTITQGDVQDASNMIGLQSKEDGVKEADHYAEKNSADQEEQQQQQFVSESLPNDNVEEEESVPQKRTSARKTKSAAAKTYSDDEIADNYYEPSSDSQDSTVSKFKCKVCSKQYATQKGLKKHSLVHEKKYKCDVCMKMFYKQENMENHQKIHASKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDGKEPKKELKSEDDTDDETGPANEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLMDDNKLYDSDDDDMPGNTMDPPPESENVKKEESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTVTHIHVNMNNVNNGAGVRPVAVVGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_01405955;
80% Identity: -