Basic Information

Insect: Aphaenogaster miamiana
Gene Symbol: -
Assembly: GCA_003063725.1
Location: NJRN01000064.1:519210-521582[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.7e-05 0.011 16.6 1.7 1 23 297 319 297 319 0.97

2 12 1.7e-05 0.0019 19.0 1.4 1 23 323 345 323 345 0.99

3 12 0.00052 0.059 14.3 3.9 1 23 350 372 350 372 0.96

4 12 9.6e-05 0.011 16.6 2.4 1 23 424 446 424 446 0.98

5 12 0.00076 0.087 13.8 1.4 1 23 451 473 451 473 0.97

6 12 9.6e-05 0.011 16.6 2.2 1 23 523 545 523 545 0.98

7 12 0.00028 0.032 15.2 0.9 2 23 553 574 552 574 0.97

8 12 9.5e-07 0.00011 22.9 2.1 1 23 584 606 584 606 0.96

9 12 0.00022 0.025 15.5 1.6 1 23 612 634 612 634 0.97

10 12 0.00015 0.017 16.0 0.7 1 23 640 662 640 662 0.98

11 12 4.6e-06 0.00052 20.8 2.0 1 23 668 690 668 690 0.96

12 12 8.2e-05 0.0093 16.8 0.3 1 22 696 717 696 717 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.7e-05	0.011	16.6	1.7	1	23	297	319	297	319	0.97
2	12	1.7e-05	0.0019	19.0	1.4	1	23	323	345	323	345	0.99
3	12	0.00052	0.059	14.3	3.9	1	23	350	372	350	372	0.96
4	12	9.6e-05	0.011	16.6	2.4	1	23	424	446	424	446	0.98
5	12	0.00076	0.087	13.8	1.4	1	23	451	473	451	473	0.97
6	12	9.6e-05	0.011	16.6	2.2	1	23	523	545	523	545	0.98
7	12	0.00028	0.032	15.2	0.9	2	23	553	574	552	574	0.97
8	12	9.5e-07	0.00011	22.9	2.1	1	23	584	606	584	606	0.96
9	12	0.00022	0.025	15.5	1.6	1	23	612	634	612	634	0.97
10	12	0.00015	0.017	16.0	0.7	1	23	640	662	640	662	0.98
11	12	4.6e-06	0.00052	20.8	2.0	1	23	668	690	668	690	0.96
12	12	8.2e-05	0.0093	16.8	0.3	1	22	696	717	696	717	0.96

Sequence Information

Coding Sequence: ATGACTTCGGGTTACTTCACTTTGCCAATTAATATGGACAGAGTATGTAGGATCTGTCTCACCGAGGGTACCAATTTGTCGTCGATTTTCTCCTCTACTCAGGAAGTGAACGACCTCACGGGTCTCTCTCAAAAAATACAAGTTTGTGGCTCCATCGAGATACACGAGCAAGATGGATTACCTTCTCTGATATGCGACGTCTGCATTTATAAAGCCAGTGTCGCTCACGAGTTCAGGCAACAGTGTCAACACTCTGACGCAAGATTGCGCATGTACTACAATAAGCCTGCCAAATGTATTAAGCCTGCCACGCATTTTCAGGATTCTTGTACACAGACAGACGTACAAACGAGATTTGTACTGTCGAAAAAGGAAGACCACTTGCAGGAGgattattttgtaaaagaagACATGCAGGTGGTTGCGAGTGCGCAAGAGTACATTCAAGCCACCGATTCATTTTCCAGAAACGAAATCAGTCTGAGTACCAATCAAATTCAAATGTCGGACGATAAGCTGTTTATCTGTTCTATCGGATTTGAAGGAGGTAAAGAGGAGGGGAAGGATTCGTGCATATCAGAGAGCGAGGTTCATCAAATGACGATAGCGCAGGAAGATCCGCAAGATACTAACATCATCAATTTGCAAAACAAGGATGACGATATTAAGGAAGTCGATCAGTATGTAGAGAAGAACAATATTCAGGATCAAGAGGAGCAGTTCGTCAATGAGAGCTTAACAAATGTAGAAGAGGAGGAAAGTGTCCCACAAAAACGTACGTCTTCAAGAAAGACGAAATCGGCACCTACTAAAACATACAGCGACGACGAGATCGCTGACAATTATTACGAGCCAAGCAGCGACAGTCAAGATTCGGTAGAATCAAAATTCAAGTGCAAGGTCTGCTCCAAACAGTACGCTACGCAGAAGGGTCTGAAGAAGCACTCATTGGTCCACGAGAAAAAGTACAAGTGTGATATCTGCTTAAAGATGTTTTACAAGCAGGAGAACATGGAGAATCATCAGAAGATTCATACGTCAAAGCCGCACGCATGTCAACTCTGTCACGCATCCTTCTCTAAATCTCAGAGTCTTGTGAGACATTTAAAGTCGCACACAGAGAAAGTAAACGATATGATTAAGCAAATCAACACGAGCGAGCGAAAGGATAATAAGGAACCGAAGAAAGAGCTTAAGAGCGAAGACGATACCGACGACGAGACCGGGCCTACGAATGAAGCAGACGAATTCGAGAACGCGCCCGAGTTGTACAAATGCGAGATTTGCAACCAATATTGCTCATCCTTGAAGAACCTAAGAAGACATGCTCTCGTGCACGGCGACAAGAAGTACTCTTGCACCGTATGTAAGAAATGGTTTTTCAGGCCGGATACGTTGAAGAAACATGCGGAGAAGCACGGGCATGGGCTGTTGGATAATTTGGTGGATGACAACAAGCTGTACGATTCGGACGACGACGATATGCCAAGTAACAACACGATAGATCCCCCGCCAGAGAGTGAGAATGTCAAGAAAGAGGAGAGCGAAGAGGAAGGATCCGGAGAATACAAGTGCCAGCACTGCGACAAGGTCATGGCTACTAAGAAAGGTCTACGACGGCACGTGTCGATGCACAAGCCGAAGGCTGAGCCTGTTACCTGCGAGATCTGTAGGAAAGTCTGCGCTAGTCAGGCTCGTCTCGTTCTCCATCAGAGAACACACAAGCCAAAGGAAAAAGTGCCGCGCGAGTACCTATGTCATATCTGCAGTAAGGTGTACCCGAGCAACTCATCCCTCACCTACCACATGCGAACTCATACCGGTATTAAGCCGCACGTGTGCAAGACATGCAACAGCGGCTTCACGACCACGACGAGCCTGGCGAATCACATTCGCATTCACACGGGCGACAAGCCATTTGTCTGCCACGTGTGTAGTGCCGCATTCGCTGTGAGCTCCGCTTTTCGTAGACACTTGACCCGGCATACCGGCGAGGCGAATTATCTGTGCAAAACCTGCGGCAAGGCTTTCAAGAGGCTCAGCACGCTAAAGGAACACACGTACACTCATTCCGGGGAGAAACCGTACGTTTGCAAGACGTGCGGCGCCGCGTACAGCCACAGTGGCAGCCTATTCGCGCACCAGAAGCGCTGTCGCGCCCAGTACGGCGAGATGATTGTCGATGATCACAATCATCATCACATACCGCACACAGTCACTCATATCCACGTGAATATGAACAACGTGAATAATGGGGCCGGAGTGCGACCGGTCGCTGTACTAGGTCAAATGTTCTAA
Protein Sequence: MTSGYFTLPINMDRVCRICLTEGTNLSSIFSSTQEVNDLTGLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKCIKPATHFQDSCTQTDVQTRFVLSKKEDHLQEDYFVKEDMQVVASAQEYIQATDSFSRNEISLSTNQIQMSDDKLFICSIGFEGGKEEGKDSCISESEVHQMTIAQEDPQDTNIINLQNKDDDIKEVDQYVEKNNIQDQEEQFVNESLTNVEEEESVPQKRTSSRKTKSAPTKTYSDDEIADNYYEPSSDSQDSVESKFKCKVCSKQYATQKGLKKHSLVHEKKYKCDICLKMFYKQENMENHQKIHTSKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKELKSEDDTDDETGPTNEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYDSDDDDMPSNNTIDPPPESENVKKEESEEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTVTHIHVNMNNVNNGAGVRPVAVLGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_01405955;
80% Identity: iTF_00126914;