Basic Information

Insect: Temnothorax nylanderi
Gene Symbol: -
Assembly: GCA_030848795.1
Location: JASTWM010000005.1:830084-832470[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00013 0.02 16.6 1.7 1 23 297 319 297 319 0.97

2 12 4e-05 0.0063 18.2 1.3 1 23 323 345 323 345 0.99

3 12 0.00068 0.11 14.3 3.9 1 23 350 372 350 372 0.96

4 12 0.00013 0.02 16.6 2.4 1 23 424 446 424 446 0.98

5 12 0.001 0.16 13.8 1.4 1 23 451 473 451 473 0.97

6 12 0.00013 0.02 16.6 2.2 1 23 522 544 522 544 0.98

7 12 0.00037 0.057 15.2 0.9 2 23 552 573 551 573 0.97

8 12 1.3e-06 0.0002 22.9 2.1 1 23 583 605 583 605 0.96

9 12 0.00029 0.045 15.5 1.6 1 23 611 633 611 633 0.97

10 12 0.0002 0.032 16.0 0.7 1 23 639 661 639 661 0.98

11 12 6.1e-06 0.00095 20.8 2.0 1 23 667 689 667 689 0.96

12 12 0.00011 0.017 16.8 0.3 1 22 695 716 695 716 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00013	0.02	16.6	1.7	1	23	297	319	297	319	0.97
2	12	4e-05	0.0063	18.2	1.3	1	23	323	345	323	345	0.99
3	12	0.00068	0.11	14.3	3.9	1	23	350	372	350	372	0.96
4	12	0.00013	0.02	16.6	2.4	1	23	424	446	424	446	0.98
5	12	0.001	0.16	13.8	1.4	1	23	451	473	451	473	0.97
6	12	0.00013	0.02	16.6	2.2	1	23	522	544	522	544	0.98
7	12	0.00037	0.057	15.2	0.9	2	23	552	573	551	573	0.97
8	12	1.3e-06	0.0002	22.9	2.1	1	23	583	605	583	605	0.96
9	12	0.00029	0.045	15.5	1.6	1	23	611	633	611	633	0.97
10	12	0.0002	0.032	16.0	0.7	1	23	639	661	639	661	0.98
11	12	6.1e-06	0.00095	20.8	2.0	1	23	667	689	667	689	0.96
12	12	0.00011	0.017	16.8	0.3	1	22	695	716	695	716	0.96

Sequence Information

Coding Sequence: ATGACTTCGGGTTACTTCACTCTGCCGATTAATATGGACAGAGTGTGCAGGATCTGTCTCACCGAGGGCACCAATCTGTCGTCGATTTTCTCCTCTACTCAAGAAGTGAACGATCTCACGGATCTCTCTCAAAAAATACAAGTCTGTGGCTCCATCGAGATACACGAGCAGGATGGATTACCTTCCCTGATATGCGACGTCTGTATTTATAAGGCCAGCGTCGCCCACGAGTTCAGGCAACAGTGTCAACACTCGGACGCGAGGTTGCGCATGTACTATAATAAGCCTGCCAAGATGAAATCTGCCACGGATTTTCAAGATTCTTGTACACAGACAGACCTACAAAGGAGATTCGTATTTTCGAAAAAGCCAGACTTCCAGGAGGATTATTTTGCAAAGGACGACATGCAGGTGGTTGCGAGTGAGCAAGAGTACATTCAAACCACCGACTCGTTTCCCAGAAGCGAAGTCAGTCTGAATGCCAATGAAATTCAAATGCCGTGCGAAAAACTGTTCATCTGTTCCATTGGATTTGAAAATGCTAAAGAGGAGGGGAAGGATTCTTGCATATCGGAGACCGAGGTTCACCAAATGACGATAGCTCAGGAAGATGCGCAGGATACGTCTAACATCATCAGTTTGCAAAACAAGGATGACGACATCAAGGAGGCCGAACAGTATGTAGAGAAGAACAGTGTAGATCAGGAGGAGCAGTTCGTCAATGAAAGCTTGTCCAATGATAATGTCGAAGAAGAGGAAAGCGTCCCGCAAAAACGTACGTCTGCGAGAAAGACGAAGTCGGCACCTACTAAAACGTATAGCGACGACGAGATTGCTGACAATTATTACGAGCCGAGCAGCGACAGTCAAGATTCAGTGGAGTCGAAATTTAAGTGTAAGGTCTGCTCCAAGCAATACGCCACGCAGAAGGGTCTGAAGAAGCATTCGTTGGTCCACGAGAAGAAGTACAAATGTGATGTCTGCTTAAAGATGTTTTACAAACAGGAGAACATGGAAAACCATCAGAAGATTCATACGTCGAAGCCGCACGCGTGCCAGCTCTGTCACGCGTCCTTCTCCAAATCTCAGAGTCTCGTGAGACACTTGAAGTCGCACACGGAGAAAGTGAACGATATGATTAAGCAGATCAATACGAGCGAGCGAAAGGATAATAAGGAACCGAAGAAAGAGCTTAAGAGCGAGGACGATACCGACGATGAGACCGGGCCTGCAAATGAGGCGGACGAATTCGAGAACGCGCCCGAGTTGTACAAATGTGAGATTTGCAACCAATATTGTTCATCCTTGAAGAACCTGAGAAGACACGCCCTCGTGCACGGCGACAAGAAGTACTCTTGCACCGTGTGTAAAAAATGGTTTTTCAGGCCGGACACGTTGAAAAAACACGCGGAGAAGCATGGGCACGGGCTGTTGGATAATTTGGTGGATGACAACAAGCTGTACGATTCGGACGACGACGATATGCCAGGCAACACGATGGATCCCCCGCAAGAAAGCGAGAACGTCAAGAAGGAAGAGAGCGACGAGGAAGGATCCGGAGAGTACAAGTGCCAACACTGCGACAAGGTCATGGCCACTAAGAAAGGTCTGCGACGGCACGTGTCGATGCACAAGCCGAAGGCCGAGCCCGTCACCTGCGAGATCTGCAGGAAAGTCTGCGCTAGTCAGGCTCGTCTCGTTCTCCATCAGAGAACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAGTACCTGTGCCACATCTGCAGTAAGGTATACCCGAGCAACTCGTCCCTCACCTATCACATGCGAACTCACACCGGCATCAAGCCGCACGTGTGCAAGACGTGCAACAGCGGCTTCACGACCACGACGAGCTTGGCGAATCACATTCGCATTCACACGGGCGACAAGCCGTTTGTCTGTCACGTGTGTAGCGCCGCGTTCGCTGTGAGCTCGGCTTTTCGCCGACACCTGACCCGGCACACCGGCGAGGCGAATTATCTGTGCAAAACCTGCGGCAAGGCCTTCAAGAGGCTCAGCACGTTGAAGGAGCACACGTACACTCATTCCGGTGAGAAACCGTACGTGTGCAAGACGTGCGGCGCCGCGTACAGCCACAGCGGCAGCCTCTTCGCGCATCAGAAACGCTGCCGCGCCCAGTACGGCGAGATGATTGTCGACGATCACAATCATCATCACATACCGCACACAGTCACTCATATCCACATGAATATGAATAACGTGAATAACGGGGCGGGAGTGCGACCGGTCGCTGTGATAGGTCAAATGTTCTAA
Protein Sequence: MTSGYFTLPINMDRVCRICLTEGTNLSSIFSSTQEVNDLTDLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKMKSATDFQDSCTQTDLQRRFVFSKKPDFQEDYFAKDDMQVVASEQEYIQTTDSFPRSEVSLNANEIQMPCEKLFICSIGFENAKEEGKDSCISETEVHQMTIAQEDAQDTSNIISLQNKDDDIKEAEQYVEKNSVDQEEQFVNESLSNDNVEEEESVPQKRTSARKTKSAPTKTYSDDEIADNYYEPSSDSQDSVESKFKCKVCSKQYATQKGLKKHSLVHEKKYKCDVCLKMFYKQENMENHQKIHTSKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKELKSEDDTDDETGPANEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYDSDDDDMPGNTMDPPQESENVKKEESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTVTHIHMNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_01405955;
80% Identity: -