Basic Information

Insect: Atta colombica
Gene Symbol: -
Assembly: GCA_001594045.1
Location: NW:771776-775475[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.3e-05 0.0018 17.8 1.1 1 23 291 313 291 313 0.97

2 12 1.4e-05 0.00077 19.0 1.4 1 23 317 339 317 339 0.99

3 12 0.00044 0.023 14.3 3.9 1 23 344 366 344 366 0.96

4 12 8.1e-05 0.0043 16.6 2.4 1 23 418 440 418 440 0.98

5 12 0.00065 0.034 13.8 1.4 1 23 445 467 445 467 0.97

6 12 8.1e-05 0.0043 16.6 2.2 1 23 517 539 517 539 0.98

7 12 0.00055 0.029 14.0 1.0 2 23 547 568 546 568 0.97

8 12 8.1e-07 4.3e-05 22.9 2.1 1 23 578 600 578 600 0.96

9 12 0.00018 0.0097 15.5 1.6 1 23 606 628 606 628 0.97

10 12 0.00013 0.0069 16.0 0.7 1 23 634 656 634 656 0.98

11 12 3.9e-06 0.00021 20.8 2.0 1 23 662 684 662 684 0.96

12 12 6.9e-05 0.0037 16.8 0.3 1 22 690 711 690 711 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.3e-05	0.0018	17.8	1.1	1	23	291	313	291	313	0.97
2	12	1.4e-05	0.00077	19.0	1.4	1	23	317	339	317	339	0.99
3	12	0.00044	0.023	14.3	3.9	1	23	344	366	344	366	0.96
4	12	8.1e-05	0.0043	16.6	2.4	1	23	418	440	418	440	0.98
5	12	0.00065	0.034	13.8	1.4	1	23	445	467	445	467	0.97
6	12	8.1e-05	0.0043	16.6	2.2	1	23	517	539	517	539	0.98
7	12	0.00055	0.029	14.0	1.0	2	23	547	568	546	568	0.97
8	12	8.1e-07	4.3e-05	22.9	2.1	1	23	578	600	578	600	0.96
9	12	0.00018	0.0097	15.5	1.6	1	23	606	628	606	628	0.97
10	12	0.00013	0.0069	16.0	0.7	1	23	634	656	634	656	0.98
11	12	3.9e-06	0.00021	20.8	2.0	1	23	662	684	662	684	0.96
12	12	6.9e-05	0.0037	16.8	0.3	1	22	690	711	690	711	0.96

Sequence Information

Coding Sequence: ATGACTTCGGATTACTTTACTTTACCAGTTAATATGGACAGAGTATGTAGGATCTGTCTTCAAGAGGGTACCAATTTGTCATCAATCTTCTCCTCTACACAAGAAGTGAACAATCTCACGGGTCTTtctcaaaaaatacaaatttgtgGCTCCATTGAAATAGATGAGCAGGATGGATTACCTTCCCTGATATGTAATGACTGCATTTACAAGGCCAGCGTCGCCCATGAGTTCAGACAACAATGTCAATACTCTGACGCAAGATTACGCATGTACTACAATAAGCCTGTCAAATCTATTAAGTCTACCATGGATTTGCAGGATTCTTATACACAAACAGATCTACAAACAAGATTTGTACAGTCAAAAAAGTCAGACCACTTTCAAGAGGATTATTTTAAGGAAGACATGCAAGTAGTTACGAGTGCACAAGAGTACATTCAAACCACCGATTCATTTCCCAGAGTCAATCTAAATACCAATCAAATTCAAATACCAGATGAAAAGCTATTCATTTGTTCTATCGGATTTGAAGGAAGTAAAGAAGAGGTGAAAGATTCTTGCATATCAGAGAATGAGGTTCATCAAATGACAATAGTACAGGAAGATGCACAGGGtactaacattattaatttacaaaacaaGGATGACGAAATTAAGGAAGCCGATCAGTATGTGGAAAAGAATATAGTTCAGGAGGAGCAATTCGTGACTGAAAGTTTATCCAATGATAATATAGAAGAGGAAAATGTCCCGCAAAAACGCACATCTACGAGAAAAACAAAATCTGCTAAAACATATAGCGACGATGAGGTTGTTGACAATTATTACGAGCCGAGTAGTGATAGCCAAGATTCAGTGGAGTCCAAGTTTAAATGTAAGGTCTGTTCCAAACAATATGCAACACAGAAGGGTCTGAAGAAGCATGCTTTGGTCcacgaaaagaaatataaatgtgatatctgtttaaaaatgttttacaagcAGGAAAACATGGAGAATCATCAGAAGATTCATGCATCGAAACCGCATGCGTGTCAGCTTTGTCATGCATCCTTCTCAAAGTCTCAGAGTCTCGTGAGGCACTTAAAGTCACATACAGAGAAAGTAAACGATATGATTAAGCAGATCAACACAAGCGAGcgaaaagataataaagaaccgaagaaagaatttaagaGTGAAGATGATACCGATGATGAGACTGGGCCTGCGAATGAAGCGGACGAATTCGAGAACGCGCCAGAATTGTACAAGTGCGAGATTTGCAACCAGTACTGCTCATCCTTGAAGAATTTAAGAAGACATGCACTGGTGCATGGCGACAAGAAGTACTCTTGTACTGTATGTAAGAAATGGTTCTTCAGGCCAGATACATTAAAGAAACATGCGGAGAAGCATGGACATGGGCTGTTGGATAATTTGATGGATGATAATAAGCTATACGATTCGGATGACGACGATATGCCAAGCAACAACACGATGGATCCTCCACCGGAGGGCGAAAACGTCAAGAAAGAGGAGAGCGACGAGGAAGGAACTGGAGAATACAAATGCCAACATTGTGACAAGGTCATGGCCACCAAGAAAGGTCTGCGACGGCATGTATCGATGCATAAGCCTAAGGCCGAGCCAGTTACTTGCGAGATTTGTAGGAAAGTCTGTGCAAGTCAGGCTCGTCTCGTTCTCCATCAGAAAACGCATAAGCCGAAAGAGAAGGTACCGCGCGAGTATCTGTGTCATATCTGTAGTAAGGTATACCCAAGCAATTCGTCCCTCACCTACCACATGCGAACTCACACCGGCATTAAGCCACATGTGTGCAAGACATGTAACAGCGGTTTCACGACCACGACAAGCCTGGCGAATCACATTCGTATTCACACAGGCGACAAGCCATTTGTGTGTCACGTATGTAGCGCCGCATTTGCTGTCAGCTCGGCTTTTCGCAGACATTTAACCCGACATACTGGTGAAGCAAATTACCTATGTAAAACCTGCGGTAAAGCTTTCAAGAGGCTTAGCACGTTAAAAGAGCATACGTACACTCATTCTGGTGAGAAACCGTACGTATGCAAGACGTGCGGCGCCGCGTACAGTCACAGCGGCAGTCTCTTTGCACACCAGAAGCGTTGTCGCGCCCAATATGGCGAGATGATTGTTGATGATCACAATCATCATCACATACCACATACAATTACTCATATCCACGTAAATATGAATAACGTTAATAACGGACAAGCAGTGCGACCAGTCGCTATGATAGGTCAAATGTTTTAA
Protein Sequence: MTSDYFTLPVNMDRVCRICLQEGTNLSSIFSSTQEVNNLTGLSQKIQICGSIEIDEQDGLPSLICNDCIYKASVAHEFRQQCQYSDARLRMYYNKPVKSIKSTMDLQDSYTQTDLQTRFVQSKKSDHFQEDYFKEDMQVVTSAQEYIQTTDSFPRVNLNTNQIQIPDEKLFICSIGFEGSKEEVKDSCISENEVHQMTIVQEDAQGTNIINLQNKDDEIKEADQYVEKNIVQEEQFVTESLSNDNIEEENVPQKRTSTRKTKSAKTYSDDEVVDNYYEPSSDSQDSVESKFKCKVCSKQYATQKGLKKHALVHEKKYKCDICLKMFYKQENMENHQKIHASKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKEFKSEDDTDDETGPANEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLMDDNKLYDSDDDDMPSNNTMDPPPEGENVKKEESDEEGTGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQKTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTITHIHVNMNNVNNGQAVRPVAMIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_00417770;
80% Identity: -