Basic Information

Insect: Acromyrmex heyeri
Gene Symbol: -
Assembly: GCA_017607565.1
Location: JAANIB010006769.1:34789-102382[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3e-05 0.0015 17.9 1.1 1 23 242 264 242 264 0.97

2 12 1.3e-05 0.00065 19.1 1.4 1 23 268 290 268 290 0.99

3 12 0.0004 0.02 14.4 3.9 1 23 295 317 295 317 0.96

4 12 7.4e-05 0.0037 16.7 2.4 1 23 369 391 369 391 0.98

5 12 0.00059 0.029 13.9 1.4 1 23 396 418 396 418 0.97

6 12 7.4e-05 0.0037 16.7 2.2 1 23 468 490 468 490 0.98

7 12 0.0005 0.025 14.1 1.0 2 23 498 519 497 519 0.97

8 12 7.3e-07 3.6e-05 23.0 2.1 1 23 529 551 529 551 0.96

9 12 0.00017 0.0083 15.6 1.6 1 23 557 579 557 579 0.97

10 12 0.00012 0.0059 16.1 0.7 1 23 585 607 585 607 0.98

11 12 3.5e-06 0.00017 20.9 2.0 1 23 613 635 613 635 0.96

12 12 6.3e-05 0.0031 16.9 0.3 1 22 641 662 641 662 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3e-05	0.0015	17.9	1.1	1	23	242	264	242	264	0.97
2	12	1.3e-05	0.00065	19.1	1.4	1	23	268	290	268	290	0.99
3	12	0.0004	0.02	14.4	3.9	1	23	295	317	295	317	0.96
4	12	7.4e-05	0.0037	16.7	2.4	1	23	369	391	369	391	0.98
5	12	0.00059	0.029	13.9	1.4	1	23	396	418	396	418	0.97
6	12	7.4e-05	0.0037	16.7	2.2	1	23	468	490	468	490	0.98
7	12	0.0005	0.025	14.1	1.0	2	23	498	519	497	519	0.97
8	12	7.3e-07	3.6e-05	23.0	2.1	1	23	529	551	529	551	0.96
9	12	0.00017	0.0083	15.6	1.6	1	23	557	579	557	579	0.97
10	12	0.00012	0.0059	16.1	0.7	1	23	585	607	585	607	0.98
11	12	3.5e-06	0.00017	20.9	2.0	1	23	613	635	613	635	0.96
12	12	6.3e-05	0.0031	16.9	0.3	1	22	641	662	641	662	0.96

Sequence Information

Coding Sequence: ATGAGACAAGAAATTGGTATGCTTGATAATCGTGGTGTGATAGTGGAAGTCGATGAAGCGAAAATTGGtcgaagaaaatataatcgagAACGGGTATATGTGCATCAGACCGTTAATCActctattaattttgttgaccCTAAATCtggtgtatatacaGATTTGCAGGATTCTTATACACAGACAGATCTACAAACGAGATTTGTACAGTCAAAAAAGTCAGACCATTTTCAAGAGGATTATTTTAAGGAAGACATACAAGTAGTTACGAGTGCGCAAGAGTACATTCAAACCACCGATTCATTTCCCAGAGTCAATCTGAATACCAATCAAATTCAAATACCAGATGAAAAGTTATTCATCTGTTCTATCGGATTTGAAGGAAGTAAAGAAGAGGTGAAGGATTCTTGCATATCAGAGAGTGAGGTTCATCAAATGACAATAGTACAGGAAGATGCACAGGATACTAACATTATCAATTTACAAAACAAGGATGACGAAATTAAGGAAGCCGATCAGTATGtggaaaagaataatatagtTCAGGAGGAGCAATTCGTGACTGAAAGTTTATCCAATGATAATatagaagaagaggaaaacgTCCCGCAAAAACGCACATCTACGAGAAAAACAAAATCTGCTAAAACATACAGCGACGACGAGGTTATTGACAATTATTACGAGCCGAGTAGTGATAGCCAAGATTCAGTGGAGTCCAAGTTTAAGTGTAAGGTTTGCTCCAAACAATACGCAACACAGAAGGGTCTGAAGAAGCATGCTTTGGTCCATGAAAAGAAGTATAAATGTGATatctgtttaaaaatgttctaCAAGCAAGAAAACATGGAGAATCATCAGAAGATTCATGCATCAAAACCGCATGCGTGTCAGCTTTGTCATGCGTCATTCTCAAAGTCTCAGAGTCTCGTGAGGCACTTGAAGTCACATACAGAGAAAGTAAACGATATGATTAAGCAGATCAACACAAGCGAGCGAAAGGATAATAAAGAACCGAAGAAAGAATTCAAGAGTGAAGATGATACCGACGACGAGACTGGGCCTGCGAATGAAGCGGACGAATTCGAGAACGCGCCAGAGTTGTACAAGTGTGAGATTTGCAACCAATATTGCTCATCCTTGAAGAATCTAAGAAGACATGCCCTGGTACATGGCGATAAGAAGTACTCTTGTACCGTATGTAAGAAATGGTTCTTCAGGCCGGATACGTTAAAGAAACACGCGGAGAAGCACGGGCATGGGCTGTTGGATAATTTGATGGATGATAATAAGCTGTACGATTCGGATGACGACGATATGCCAAGCAACAACACAATGGATCCTCCGCCGGAGAGCGAAAATGTCAAGAAAGAGGAGAGCGACGAGGAAGGAACCGGAGAATACAAATGCCAACATTGTGACAAAGTCATGGCCACCAAAAAAGGTCTGCGACGGCACGTATCGATGCACAAACCTAAGGCCGAGCCGGTTACTTGTGAGATTTGTAGGAAAGTCTGTGCAAGTCAGGCTCGTCTCGTTCTCCATCAGAAAACGCATAAACCGAAAGAGAAGGTACCGCGCGAGTACTTGTGTCACATCTGCAGTAAGGTGTATCCAAGCAATTCATCCCTCACCTACCACATGCGAACTCACACCGGCATTAAGCCACATGTGTGCAAGACATGTAACAGCGGCTTCACGACCACAACGAGCCTGGCGAATCATATTCGTATTCACACGGGCGACAAGCCGTTTGTGTGTCACGTATGTAGCGCCGCATTCGCTGTGAGCTCAGCTTTTCGCAGGCATTTAACCCGGCATACTGGTGAGGCAAATTACCTATGTAAAACCTGCGGTAAGGCTTTCAAAAGACTCAGCACGTTAAAGGAGCACACGTACACTCATTCTGGTGAAAAACCGTATGTATGCAAAACATGCGGCGCCGCGTACAGCCACAGCGGCAGCCTCTTTGCACATCAGAAGCGTTGTCGCGCCCAATATGGCGAGATGATTGTTGATGATCACAATCATCATCATATACCACATACAATCACTCATATCCACGTAAATATGAATAACGTCAATAACGGACAAGCAGTGCGACCAGTCGCTATGATAGGTCAAATGTTT
Protein Sequence: MRQEIGMLDNRGVIVEVDEAKIGRRKYNRERVYVHQTVNHSINFVDPKSGVYTDLQDSYTQTDLQTRFVQSKKSDHFQEDYFKEDIQVVTSAQEYIQTTDSFPRVNLNTNQIQIPDEKLFICSIGFEGSKEEVKDSCISESEVHQMTIVQEDAQDTNIINLQNKDDEIKEADQYVEKNNIVQEEQFVTESLSNDNIEEEENVPQKRTSTRKTKSAKTYSDDEVIDNYYEPSSDSQDSVESKFKCKVCSKQYATQKGLKKHALVHEKKYKCDICLKMFYKQENMENHQKIHASKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKEFKSEDDTDDETGPANEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLMDDNKLYDSDDDDMPSNNTMDPPPESENVKKEESDEEGTGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQKTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTITHIHVNMNNVNNGQAVRPVAMIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_00417770;
80% Identity: -