Chis024355.1
Basic Information
- Insect
- Cataglyphis hispanica
- Gene Symbol
- -
- Assembly
- GCA_004195275.1
- Location
- SGAY01005415.1:104-1996[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.9e-05 0.0063 17.6 2.0 1 23 162 184 162 184 0.97 2 12 2.3e-05 0.0029 18.7 1.7 1 23 188 210 188 210 0.99 3 12 0.00022 0.028 15.6 2.9 1 23 215 237 215 237 0.96 4 12 9.1e-05 0.012 16.8 2.9 1 23 289 311 289 311 0.98 5 12 0.00066 0.085 14.1 1.4 1 23 316 338 316 338 0.97 6 12 8.3e-05 0.011 16.9 2.2 1 23 388 410 388 410 0.98 7 12 0.00026 0.033 15.4 0.9 2 23 418 439 417 439 0.97 8 12 8.2e-07 0.00011 23.2 2.1 1 23 449 471 449 471 0.96 9 12 0.00019 0.024 15.8 1.6 1 23 477 499 477 499 0.97 10 12 0.00013 0.017 16.3 0.7 1 23 505 527 505 527 0.98 11 12 4e-06 0.00051 21.1 2.0 1 23 533 555 533 555 0.96 12 12 7.1e-05 0.0091 17.1 0.3 1 22 561 582 561 582 0.96
Sequence Information
- Coding Sequence
- ATGCAGGTGGTTGCAAATCCACAAGAATACATCCAATCCACTGATTCGTTTTCTAGAAGCGAAATCAATCTAAATACCAATCAAATTCATATGTCAGATGACAAGCTGTTTATATGTTCTATCGGATTTGAAGGGAGTAAAGAGGAAGCAAAGGATTCTTGCATATCAGAGAGCGAGGTTCACCAGATGACAATTGTGCAGGAAGATGTGCAAGAAGATACATCTAACATTATGAATCTACAAAATAAAGATGGCGAGACCAAGGAAATTGATCAGTATGTAGAGAAAGACAGTACAGAACAAGAGGAGTTTGTCAGCGAGAACATACCCAATGATAATgtagaagaggaagagagcaTCCCACAAAAACGTGTGTCCATGAGAAAAACGAAATTAGCATCGACTAAGACATATAGCGATGACGAGATTGGTGACAATTATTACGAGCAGAGCAGCGACAGTCAAGATTCAATAGAGTTAAAGTTTAAATGCAAGGTCTGTTCCAAAAAATATGCCACGCAAAAAGGTTTGAAGAAGCATTCGCTGGTCCAcgaaaaaaagtacaaatgcAACGTCTGCTTAAAGATGTTTTACAAACAGGAAAACATGGAGAATCATCAGAAGATACATGCGTCGAAGCCGCATGCGTGTCAACTCTGTCACGCGTCATTTTCGAAACCCCAGAGTCTCGTGAGACACCTGAAATCTCACACAGAGAAGGTAAATGATATGATCAAGCAGATCAATACGAATGAGCGAAAGGATAATAAGGAACCGAAGAAAGAGCTCAAAAGCGAAGATGACACTGACGACGAGACTGGACCTGCGAACGAAACGGATGAATTCGAGAACGCGCCTGAGTTGTACAAATGTGAGATTTGTAATCAATATTGTTCATCTCTGAAGAATTTGAGGAGGCATGCCCTCATGCACGGCGATAAGAAATACTCATGTACCGTATGTAAGAAATGGTTCTTCAGGCCGGATACGTTGAAGAAACACGCGGAGAAGCATGGACATGGATTATTGGACAATCTGGCGGATGACAATAAGCTATATGATTCGGATGACGATGATATGCCCGTTAATAACACAGTGGATCCCATGCCAGAGAATGAAAATGtcaagagagaggaaagtgaTGAAGAGGGGTCTGGGGAATACAAGTGCCAGCACTGTGACAAAGTCATGGCCACCAAAAAAGGTTTGCGACGGCATGTGTCAATGCACAAACCGAAGGCCGAACCCGTGACTTGCGACGTCTGCAGAAAAGTCTGCGCTAGTCAGGCTCGTCTCATTCTCCATCAAAGAACGCACAAACCGAAGGAGAAGGTGCCGCGCGAATACCTGTGTCACATTTGCAGCAAGGTATATCCAAGCAATTCATCTCTTACATATCACATGCGAACTCATACAGGCGTTAAACCACACGTGTGCAAGACATGCAATAGCGGCttcacgacgacgacgagtcTGGCGAATCACATTCGTATTCATACGGGCGACAAGCCGTTCGTCTGTCACGTATGTAGTGCCGCATTCGCTGTGAGTTCGGCCTTTCGCAGACATCTAACCCGGCACACTGGTGAAGCAaattatttgtgcaaaacgtGCGGCAAGGCCTTCAAGCGGCTCAGCACGCTGAAGGAACATACATACACCCATTCTGGCGAGAAGCCATACGTATGTAAGACATGCGGCGCCGCGTACAGTCACAGCGGCAGCCTCTTTGCGCATCAGAAGCGCTGCCGCGTCCAGTACGGCGAGGTGATTGTCGACGATCATAATCATCATCACATACCCCACTCGGTCGCTCATATTCACGTGAATATGAATAACGTAAATAACGGAGCAGGAGTACGACCAGTCGCTGTGATAGGTCAAATGTTCTAA
- Protein Sequence
- MQVVANPQEYIQSTDSFSRSEINLNTNQIHMSDDKLFICSIGFEGSKEEAKDSCISESEVHQMTIVQEDVQEDTSNIMNLQNKDGETKEIDQYVEKDSTEQEEFVSENIPNDNVEEEESIPQKRVSMRKTKLASTKTYSDDEIGDNYYEQSSDSQDSIELKFKCKVCSKKYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMENHQKIHASKPHACQLCHASFSKPQSLVRHLKSHTEKVNDMIKQINTNERKDNKEPKKELKSEDDTDDETGPANETDEFENAPELYKCEICNQYCSSLKNLRRHALMHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDDDDMPVNNTVDPMPENENVKREESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCDVCRKVCASQARLILHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYGEVIVDDHNHHHIPHSVAHIHVNMNNVNNGAGVRPVAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00264473;
- 90% Identity
- iTF_01077666; iTF_00109992; iTF_00869065; iTF_01245385; iTF_01254987; iTF_00729519; iTF_00730234; iTF_00868276; iTF_00867630; iTF_00264473; iTF_00265185;
- 80% Identity
- -