Tame001226.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Temnothorax americanus
Gene Symbol
-
Assembly
GCA_030770215.1
Location
JASTWO010000010.1:1169297-1171688[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.6e-05 0.0087 17.6 1.9 1 23 296 318 296 318 0.97
2 12 3.7e-05 0.0056 18.2 1.3 1 23 322 344 322 344 0.99
3 12 0.00062 0.095 14.3 3.9 1 23 349 371 349 371 0.96
4 12 0.00012 0.018 16.6 2.4 1 23 423 445 423 445 0.98
5 12 0.00092 0.14 13.8 1.4 1 23 450 472 450 472 0.97
6 12 0.00012 0.018 16.6 2.2 1 23 521 543 521 543 0.98
7 12 0.00033 0.051 15.2 0.9 2 23 551 572 550 572 0.97
8 12 1.1e-06 0.00018 22.9 2.1 1 23 582 604 582 604 0.96
9 12 0.00026 0.04 15.5 1.6 1 23 610 632 610 632 0.97
10 12 0.00018 0.028 16.0 0.7 1 23 638 660 638 660 0.98
11 12 5.5e-06 0.00085 20.8 2.0 1 23 666 688 666 688 0.96
12 12 9.8e-05 0.015 16.8 0.3 1 22 694 715 694 715 0.96

Sequence Information

Coding Sequence
ATGACTTCGGGTTACTTCACTCTGCCGATTAATATGGACAGAGTGTGCAGGATCTGTCTCACCGAGGGCACCAATCTGTCGTCGATTTTCTCCTCTACTCAAGAAGTAAACGATCTCACGGATCTCTCTCAAAAAATACAAGTCTGCGGCTCCATCGAGATACACGAGCAGGATGGATTACCTTCCTTGATATGCGACGTCTGTATTTATAAGGCCAGCGTCGCCCACGAGTTCAGGCAACAGTGTCAACACTCGGACGCGAGGTTGCGAATGTACTATAATAAGCCTGCTAAGATGAAATCTGCCACGGATTTTCAAGATTCTTGTACACAGACAGACCAAACGAGATtcatattttcgaaaaagcCAGACTTCCAGGAGGATTATTTTGCGAAGGACGACATGCAGGTGGTTGAGAGTGAACAAGAGTACATTCAAACCACCGACTCGTTTCCCAGAAGCGAAGTCAGTCTGAATGCCAATCAAATTCAAATGCCATGCGAAAAACTGTTTATCTGTTCCATTGGATTTGAAAGTGCTAAAGAGGAGGGGAAGGATTCTTGCATATCGGAGACCGAGGTTCACCAAATGACGATAGCTCAGGAAGATGCGCAGGATACGTCTAACATCATAAGTTTGCAAAACAAGAATGACGACATGAAGGAGGCCGAACAGTATGTAGAGAAGAACAGTGTAGATCAGGAGGAGCAGTTCGTCGATGAAAGCTTGTCCAATGATAATGTCGAAGAAGAGGAAAGCGTCCCGCAAAAACGTACGTCTGCGAGAAAGACGAAGTCGGCACCCGCTAAAACGTATAGCGACGACGAGATTGCTGACAATTATTACGAGCCGAGCAGCGACAGTCAAGATTCAGTGGAGTTGAAATTTAAGTGTAAGGTTTGCTCCAAGCGATACGCCACGCAGAAGGGTCTGAAGAAGCATTCGTTGGTCCACGAGAAGAAGTACAAATGTGATGTCTGCTTAAAGATGTTTTACAAACAGGAGAACATGGAAAACCATCAGAAGATTCATACGTCGAAGCCGCACGCGTGCCAGCTCTGTCACGCGTCCTTCTCAAAATCTCAGAGTCTCGTGAGACACTTGAAGTCGCACACGGAGAAAGTGAACGATATGATTAAGCAGATCAATACGAGCGAGCGAAAGGATAATAAAGAACCGAAGAAAGAGCTCAAGAGCGAGGACGATACCGACGATGAGACCGGGCCTGCAAATGAGGCGGACGAATTCGAGAATGCGCCCGAGTTGTACAAATGCGAGATTTGCAACCAATATTGTTCATCCTTGAAGAACCTAAGAAGACACGCCCTCGTGCACGGCGACAAAAAGTATTCTTGCACCGTGTgtaaaaaatggtttttcagGCCGGACACGTTGAAAAAACACGCGGAGAAGCATGGGCACGGGCTGTTGGATAATTTGGTGGATGACAACAAGCTGTACGATTCGGACGACGACGATATGCCAGGCAACACGATGGATACCCCGCAAGAAAGCGAGAACGTCAAGAAGGAGGAGAGCGACGAGGAAGGATCCGGAGAGTACAAGTGCCAACACTGCGACAAGGTCATGGCCACTAAGAAAGGTCTGCGACGGCACGTGTCGATGCACAAGCCGAAGGCCGAGCCCGTCACCTGCGAGATCTGCAGGAAAGTCTGCGCTAGTCAGGCTCGTCTCGTTCTCCATCAGAGAACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAGTACCTGTGCCACATCTGCAGTAAGGTATACCCGAGCAACTCGTCCCTCACCTATCACATGCGAACTCACACCGGCATCAAGCCGCACGTGTGCAAGACGTGCAACAGCGGCTTCACGACCACGACGAGCTTGGCGAATCATATTCGCATTCACACGGGCGACAAGCCGTTCGTCTGTCACGTGTGTAGCGCCGCGTTCGCTGTGAGCTCGGCTTTTCGCCGACACCTGACCCGGCACACCGGCGAGGCGAATTACCTGTGCAAAACCTGCGGCAAGGCCTTCAAGAGGCTCAGCACGTTGAAGGAGCACACGTACACTCATTCCGGTGAGAAACCGTACGTGTGCAAGACGTGCGGCGCCGCGTACAGCCACAGCGGCAGCCTCTTCGCGCATCAGAAACGCTGCCGCGCCCAGTACGGCGAGATGATTGTCGACGATCACAATCATCATCACATACCGCACACAGTCACTCATATCCACGTGAATATGAATAACGTGAATAACGGGGCGGGAGTGCGACCGGTCGCTGTGATAGGTCAAATGTTCTAA
Protein Sequence
MTSGYFTLPINMDRVCRICLTEGTNLSSIFSSTQEVNDLTDLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKMKSATDFQDSCTQTDQTRFIFSKKPDFQEDYFAKDDMQVVESEQEYIQTTDSFPRSEVSLNANQIQMPCEKLFICSIGFESAKEEGKDSCISETEVHQMTIAQEDAQDTSNIISLQNKNDDMKEAEQYVEKNSVDQEEQFVDESLSNDNVEEEESVPQKRTSARKTKSAPAKTYSDDEIADNYYEPSSDSQDSVELKFKCKVCSKRYATQKGLKKHSLVHEKKYKCDVCLKMFYKQENMENHQKIHTSKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKELKSEDDTDDETGPANEADEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYDSDDDDMPGNTMDTPQESENVKKEESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTVTHIHVNMNNVNNGAGVRPVAVIGQMF