Basic Information

Insect: Camponotus floridanus
Gene Symbol: -
Assembly: GCA_003227725.1
Location: NW:15140-20970[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.7e-05 0.0053 16.6 1.7 1 23 298 320 298 320 0.97

2 12 2.6e-05 0.0021 17.9 1.7 1 23 324 346 324 346 0.99

3 12 0.00017 0.014 15.3 2.9 1 23 351 373 351 373 0.96

4 12 6.6e-05 0.0053 16.6 2.4 1 23 425 447 425 447 0.98

5 12 0.00052 0.042 13.8 1.4 1 23 452 474 452 474 0.97

6 12 6.6e-05 0.0053 16.6 2.2 1 23 524 546 524 546 0.98

7 12 0.0002 0.016 15.1 0.9 2 23 554 575 553 575 0.97

8 12 6.5e-07 5.2e-05 22.9 2.1 1 23 585 607 585 607 0.96

9 12 0.00015 0.012 15.5 1.6 1 23 613 635 613 635 0.97

10 12 0.00011 0.0084 16.0 0.7 1 23 641 663 641 663 0.98

11 12 3.1e-06 0.00025 20.8 2.0 1 23 669 691 669 691 0.96

12 12 5.6e-05 0.0045 16.8 0.3 1 22 697 718 697 718 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.7e-05	0.0053	16.6	1.7	1	23	298	320	298	320	0.97
2	12	2.6e-05	0.0021	17.9	1.7	1	23	324	346	324	346	0.99
3	12	0.00017	0.014	15.3	2.9	1	23	351	373	351	373	0.96
4	12	6.6e-05	0.0053	16.6	2.4	1	23	425	447	425	447	0.98
5	12	0.00052	0.042	13.8	1.4	1	23	452	474	452	474	0.97
6	12	6.6e-05	0.0053	16.6	2.2	1	23	524	546	524	546	0.98
7	12	0.0002	0.016	15.1	0.9	2	23	554	575	553	575	0.97
8	12	6.5e-07	5.2e-05	22.9	2.1	1	23	585	607	585	607	0.96
9	12	0.00015	0.012	15.5	1.6	1	23	613	635	613	635	0.97
10	12	0.00011	0.0084	16.0	0.7	1	23	641	663	641	663	0.98
11	12	3.1e-06	0.00025	20.8	2.0	1	23	669	691	669	691	0.96
12	12	5.6e-05	0.0045	16.8	0.3	1	22	697	718	697	718	0.96

Sequence Information

Coding Sequence: ATGAATGTTGTAACAATGACTTCGGGTTACTTTGATCTGCCAATTAATATGGACAGAGTATGCAGGATTTGTCTCACCGAGGGTAATAATCTATCGCCAATCTTCTCCGCTAATCAAGATGTAAACAATTACTCAGGTCTCCCTCAAAAAATACAAGTCTGTGGTTCCATTGAGATACACGAACAGGATGGATTACCTTCCTTAATATGCGACACTTGTATTTATAACGCGACCGTTGCGCTCGAATTCAGACAGCAGTGTCAACTTTCCGATGCAAAATTACGCGCATACTATAATAAGCCCGCCAAATGTAATATTACGCATTCTTATACACAGACGGATTTACAAACGAGATTTCTACTATCAAAAAAGTCAGAACATATTGAAGAAGATTATTTTGTGAAACAAGACATGGAAGTGGTGGCAAATCCACAAGAGTACATTCAGTCCACCGACTCATTTTCCAGAGGCGAAATCAGTTTAAATACCAATCAAATTCATATGTCAGATGACAAGCTATTTATATGTTCTATCGGATTTGAAGGGAGTAAAGAGGAAGTGAAGGATTCTTGTATATCAGAGAACGAGGTTCATCAGATGACAATAGTACAGGAAGATGCGCAAGATGCATCTAacattatgaatataaataaagatgaaACCAAGGAAGTTGATCAGTACATAGAGAAAGACAATACAGAACAAGAGGAGTTTGTTAATGAGGACATACCCAATGAGAATATCGAAGAGGAAGAGAGCATTCCGCAAAAACGTACGTCCATGAGAAAAACGAAATTGGCGTCGACCAAGACATATAGCGACGATGACATCGGCGACAATTATTACGATGTCGAGCCGAGCAGCGACAGTCAAGATTCAGTGGAGTCGAAATTTAAATGCAAGGTTTGTTCCAAACAATATGCTACACAAAAAGGTCTAAAGAAACATTCGCTGGTTCACGAGAAAAAGTACAAATGTAATGTCTGCttgaaaatgttttacaaGCAGGAAAATATGGAGAGCCATCAGAAGATACACGCATCGAAGCCGCATGCGTGTCAACTCTGTCACGCATCATTTTCGAAACCCCAAAGTCTCGTGAGGCACCTAAAATCTCACACAGAAAAGGTAAATGATATGATCAAACAGATCAATACGAATGAGCGAAAGGATAATAAGGAACCGAAGAAGGAGCTCAAGAGCGAAGACGACACTGACGATGAGACCGGACCTGCAAACGAAACGGATGAATTCGAGAACGCGCCCGAGTTGTACAAATGTGAGATTTGTAATCAATATTGTTCATCTCTGAAGAACCTGAGGAGGCATGCCCTCGTGCACGGCGATAAAAAGTACTCGTGCACCGTATGTAAAAAATGGTTCTTCAGGCCGGATACGTTGAAGAAACACGCGGAGAAGCACGGGCACGGGTTGTTGGACAATTTGGCAGACGACAATAAGTTGTACGATTCGGATGACGACGATGTGCCCGCTAATAACACGGTGGATCCCGTGCCGGAGAGCGAGAACGtgaagagagaggagagcgaTGAGGAGGGGTCCGGAGAATACAAGTGCCAGCACTGCGACAAAGTCATGGCTACCAAAAAAGGTCTGCGACGACACGTGTCAATGCACAAACCAAAAGCTGAACCCGTGACCTGCGACGTCTGCAGAAAGGTCTGCGCCAGCCAAGCTCGTCTCATCCTCCATCAGAGAACGCACAAACCGAAGGAGAAGGTTCCGCGTGAATATCTGTGTCACATCTGCAGTAAGGTATATCCCAGCAACTCGTCCCTCACATATCACATGCGAACTCATACCGGCGTCAAGCCGCACGTGTGCAAGACGTGCAATAGTGGCttcacgacgacgacgagtcTGGCAAATCACATTCGCATTCACACGGGCGATAAGCCGTTCGTATGTCACGTGTGCAGTGCTGCGTTTGCCGTAAGTTCGGCCTTTCGCAGACACCTGACCCGGCACACCGGCGAAGCGAATTATCTGTGCAAGACGTGCGGCAAGGCTTTTAAGCGACTCAGTACACTCAAGGAGCACACGTACACTCATTCTGGTGAGAAGCCGTACGTGTGCAAGACATGCGGCGCCGCGTATAGTCACAGCGGCAGCCTCTTCGCGCATCAAAAGCGTTGCCGTGCTCAATACGGCGAAATGATCGTTGAAGATCACAATCATCATCATCACATATCGCACTCGGTCGCTCATATTCACGTGAATATGAATAACGTAAATAATGGGGCGGGAGTGCGACCAGTTGCTGTGATAGGTCAAATGTTCTAA
Protein Sequence: MNVVTMTSGYFDLPINMDRVCRICLTEGNNLSPIFSANQDVNNYSGLPQKIQVCGSIEIHEQDGLPSLICDTCIYNATVALEFRQQCQLSDAKLRAYYNKPAKCNITHSYTQTDLQTRFLLSKKSEHIEEDYFVKQDMEVVANPQEYIQSTDSFSRGEISLNTNQIHMSDDKLFICSIGFEGSKEEVKDSCISENEVHQMTIVQEDAQDASNIMNINKDETKEVDQYIEKDNTEQEEFVNEDIPNENIEEEESIPQKRTSMRKTKLASTKTYSDDDIGDNYYDVEPSSDSQDSVESKFKCKVCSKQYATQKGLKKHSLVHEKKYKCNVCLKMFYKQENMESHQKIHASKPHACQLCHASFSKPQSLVRHLKSHTEKVNDMIKQINTNERKDNKEPKKELKSEDDTDDETGPANETDEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDDDDVPANNTVDPVPESENVKREESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCDVCRKVCASQARLILHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVEDHNHHHHISHSVAHIHVNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_00280113;
80% Identity: -