Basic Information

Insect: Nylanderia fulva
Gene Symbol: -
Assembly: GCA_005281655.1
Location: NW:107983-113572[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.3e-05 0.0026 17.8 2.0 1 23 298 320 298 320 0.97

2 12 1.2e-05 0.00098 19.2 1.7 1 23 324 346 324 346 0.99

3 12 0.00062 0.05 13.8 4.0 1 23 351 373 351 373 0.96

4 12 8e-05 0.0064 16.6 2.4 1 23 425 447 425 447 0.98

5 12 0.00063 0.051 13.8 1.4 1 23 452 474 452 474 0.97

6 12 8e-05 0.0064 16.6 2.2 1 23 526 548 526 548 0.98

7 12 0.00024 0.019 15.1 0.9 2 23 556 577 555 577 0.97

8 12 7.9e-07 6.4e-05 22.9 2.1 1 23 587 609 587 609 0.96

9 12 0.00018 0.014 15.5 1.6 1 23 615 637 615 637 0.97

10 12 0.00013 0.01 16.0 0.7 1 23 643 665 643 665 0.98

11 12 3.8e-06 0.0003 20.8 2.0 1 23 671 693 671 693 0.96

12 12 6.8e-05 0.0054 16.8 0.3 1 22 699 720 699 720 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.3e-05	0.0026	17.8	2.0	1	23	298	320	298	320	0.97
2	12	1.2e-05	0.00098	19.2	1.7	1	23	324	346	324	346	0.99
3	12	0.00062	0.05	13.8	4.0	1	23	351	373	351	373	0.96
4	12	8e-05	0.0064	16.6	2.4	1	23	425	447	425	447	0.98
5	12	0.00063	0.051	13.8	1.4	1	23	452	474	452	474	0.97
6	12	8e-05	0.0064	16.6	2.2	1	23	526	548	526	548	0.98
7	12	0.00024	0.019	15.1	0.9	2	23	556	577	555	577	0.97
8	12	7.9e-07	6.4e-05	22.9	2.1	1	23	587	609	587	609	0.96
9	12	0.00018	0.014	15.5	1.6	1	23	615	637	615	637	0.97
10	12	0.00013	0.01	16.0	0.7	1	23	643	665	643	665	0.98
11	12	3.8e-06	0.0003	20.8	2.0	1	23	671	693	671	693	0.96
12	12	6.8e-05	0.0054	16.8	0.3	1	22	699	720	699	720	0.96

Sequence Information

Coding Sequence: ATGACTTCGGATTACTTCGATTTGCCGATTAATAATATGGACAGAGTGTGCAGGATTTGTCTCACCGAGGGTACCAATCTATCGTCAATCTTCTCCGCTAATGAAGAAGTAAACGATTTCTCGGGTCTCCCTCAGAAAATACAAGTCTGTGGTTCCATCGAGATTCACGAACAGGATGGATTGCCTTCTTTGATATGCGACGTTTGTATTTATAAGGCGAGGATTGCGCACGAATTCAGAGAGCAATGTCAACATTCCGATGCAAGATTACGCATGTACTATAACAAGCCTGCTAAATGTAATATTACGgaTTCCTGTACACAGACAGATCTACAAACAAAATTTGTACTATCGACAAAGACAGATCATATTCAAGAGGATTATTATGTGAAACAACAAGATATGCAGGTGGTTGCAAATCCACAAGAGTACATTCAATCCACTGACTCGTTTTCCAGAGACGAAATCAATTTAAATACCAATCAAATTCACATGTCCGATGATAAGCTATTTATATGTTCTATCGGATTTGAGGGGAGTAAAGAAGAAGGGAAAGATTCCTGCATATCGGAGAGCGAGGTTCATCAGATGACAATGGTGCAGGAGGAAGATGCACAGGAGGATGCGTCTAACATTATGAATCTGCAAAATAAAGATGATGAGACCAAggaaattgatcagtacataGAGAAAGACTGTACGGAACAGGAGGAGTTTGTCAGTGAGAGCTTACCTAATGATAATGTAGAAGAGGAGGAGAGCGTCCCACAGAAACGCACGTCCATGAGGAAAACGAAAATGACATCGACTAATAAGACGTACAGCGACGACGAGATCGGCGACAATTATTACGAGCCGAGCAGCGAGAGTCAAGATTCCGTCGACTTGAAATTCAAATGTAAAGTCTGCTCCAAAGAATACACCACGCAAAAGGGTCTGAAGAAGCATTCGCTGGTCCATGAGAAAAAGTACAAATGCAACATCTGCTTAAAGATGTTTTACAAACAGGAGAACATGGAGAACCATCAGAAGATACACGCGTCGAAACCGCACGCGTGTCAACTCTGTCACGCGTCATTCTCAAAATCCCAGAGCCTCGTGAAACACCTGAAATCTCATACGGAGAAGGTGAACGATATGATCAAGCAGATCAATACGAGCGAGCGGAAGGATAATAAGGAACCGAAAAAAGAGCTCAAACTCGAGGACGACACCGACGACGAAACCGGGCCTGCGAACGAAACGGACGAGTTCGAGAATGCGCCTGAATTGTACAAATGTGAGATTTGCAATCAATACTGTTCGTCCCTAAAGAACCTGAGAAGGCACGCCCTCGTGCACGGCGATAAGAAGTACTCGTGCACCGTATGCAAGAAGTGGTTCTTCAGGCCAGACACGTTGAAGAAACACGCGGAGAAGCATGGACACGGATTGTTGGACAATCTCGCGGACGACAATAAGCTGTACGATTCGGACGACGACGATACGCCTGCTAACAACATCGCGGACACTCCTGTACAGGAAAGCGAGAACGTGAAGAAAGAGGAGAGCGACGAGGAGGGAGGTTCCGGAGAGTATAAGTGCCAGCACTGCGACAAAGTCATGGCCACGAAGAAGGGTCTACGACGCCACGTGTCGATGCACAAACCGAAAGCCGAACCCGTGACCTGCGAGGTCTGCAGGAAGGTCTGCGCTAGTCAGGCTCGTCTCATTCTTCATCAGAGAACGCACAAGCCGAAAGAGAAGGTTCCGCGCGAATATTTATGTCACATTTGTAGCAAGGTGTATCCCAGCAACTCGTCCTTGACGTATCACATGCGAACTCACACCGGCGTTAAGCCGCATGTGTGCAAGACCTGCAACAGCGGCTTCACCACGACGACGAGTCTGGCAAATCACATTCGCATTCATACAGGCGACAAGCCGTTCGTCTGCCACGTCTGTTCAGCCGCGTTTGCCGTGAGCTCGGCCTTCCGTAGACACCTGACTCGACACACCGGCGAGGCGAATTATCTCTGCAAGACCTGCGGCAAGGCCTTCAAGCGTCTCAGTACCTTGAAAGAGCACACGTACACCCATTCTGGCGAGAAGCCGTACGTATGTAAGACCTGCGGAGCCGCGTACAGTCACAGCGGCAGCCTGTTCGCGCACCAGAAGCGCTGCCGCGCCCAATACGGCGAGATGATCGTCGACGATCacaatcatcatcatcatataCCGCACTCGGTCACTCATATTCACGTCAACATGAATAATGTGAATAATGGTGCGGGAGTGCGACCAGTCGCTGTGATAGGCCAAATGTTCTAA
Protein Sequence: MTSDYFDLPINNMDRVCRICLTEGTNLSSIFSANEEVNDFSGLPQKIQVCGSIEIHEQDGLPSLICDVCIYKARIAHEFREQCQHSDARLRMYYNKPAKCNITDSCTQTDLQTKFVLSTKTDHIQEDYYVKQQDMQVVANPQEYIQSTDSFSRDEINLNTNQIHMSDDKLFICSIGFEGSKEEGKDSCISESEVHQMTMVQEEDAQEDASNIMNLQNKDDETKEIDQYIEKDCTEQEEFVSESLPNDNVEEEESVPQKRTSMRKTKMTSTNKTYSDDEIGDNYYEPSSESQDSVDLKFKCKVCSKEYTTQKGLKKHSLVHEKKYKCNICLKMFYKQENMENHQKIHASKPHACQLCHASFSKSQSLVKHLKSHTEKVNDMIKQINTSERKDNKEPKKELKLEDDTDDETGPANETDEFENAPELYKCEICNQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLADDNKLYDSDDDDTPANNIADTPVQESENVKKEESDEEGGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEVCRKVCASQARLILHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHHIPHSVTHIHVNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_00280113;
80% Identity: -