Basic Information

Insect: Leptothorax acervorum
Gene Symbol: -
Assembly: GCA_035220615.1
Location: JASTWQ010000073.1:540637-543019[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00012 0.022 16.6 1.7 1 23 297 319 297 319 0.97

2 12 3.9e-05 0.0069 18.2 1.3 1 23 323 345 323 345 0.99

3 12 0.00065 0.12 14.3 3.9 1 23 350 372 350 372 0.96

4 12 6.3e-05 0.011 17.5 1.9 1 23 424 446 424 446 0.98

5 12 0.00097 0.17 13.8 1.4 1 23 451 473 451 473 0.97

6 12 0.00012 0.022 16.6 2.2 1 23 522 544 522 544 0.98

7 12 0.00035 0.062 15.2 0.9 2 23 552 573 551 573 0.97

8 12 1.2e-06 0.00021 22.9 2.1 1 23 583 605 583 605 0.96

9 12 0.00027 0.049 15.5 1.6 1 23 611 633 611 633 0.97

10 12 0.00019 0.035 16.0 0.7 1 23 639 661 639 661 0.98

11 12 5.8e-06 0.001 20.8 2.0 1 23 667 689 667 689 0.96

12 12 0.0001 0.018 16.8 0.3 1 22 695 716 695 716 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00012	0.022	16.6	1.7	1	23	297	319	297	319	0.97
2	12	3.9e-05	0.0069	18.2	1.3	1	23	323	345	323	345	0.99
3	12	0.00065	0.12	14.3	3.9	1	23	350	372	350	372	0.96
4	12	6.3e-05	0.011	17.5	1.9	1	23	424	446	424	446	0.98
5	12	0.00097	0.17	13.8	1.4	1	23	451	473	451	473	0.97
6	12	0.00012	0.022	16.6	2.2	1	23	522	544	522	544	0.98
7	12	0.00035	0.062	15.2	0.9	2	23	552	573	551	573	0.97
8	12	1.2e-06	0.00021	22.9	2.1	1	23	583	605	583	605	0.96
9	12	0.00027	0.049	15.5	1.6	1	23	611	633	611	633	0.97
10	12	0.00019	0.035	16.0	0.7	1	23	639	661	639	661	0.98
11	12	5.8e-06	0.001	20.8	2.0	1	23	667	689	667	689	0.96
12	12	0.0001	0.018	16.8	0.3	1	22	695	716	695	716	0.96

Sequence Information

Coding Sequence: ATGACTTCGGGTTACTTCACTTTGCCGATTAATATGGACAGAGTATGCAGAATCTGTCTCACCGAGGGCACCAATCTATCGTCAATTTTCTCATCTACTCAAGAAGTAAACGATCTCACGGATCTCTCTCAAAAAATACAAGTCTGTGGCTCTATCGAGATACACGAGCAGGATGGATTACCTTCCCTGATATGCGACGTCTGTATTTATAAGGCCAGCGTCGCCCACGAGTTTAGGCAACAATGTCAACACTCGGACGCGAGGTTGCGCATGTACTATAATAAGCCTGCCAAAATCAAGCCTGTCACGGATTGTCAGGATTCTTGTACACAGACAGACCTACATACGAGATTTGTACTGTCGAAAAAGTCGGACTTCCAGGAGGATTATTTTATAAAGGAAGACATGCAGGTGGTTGCGAGTGCGCAAGAGTACATTCAAACCACCGACTCGTTTCCCAGAAACGAAGTCAGTCTGAATGCCAATCAAATTCATATGTCAGATGAGAAGCTGTTCATTTGTTCTATTGGATTTGAAGGTGGTAAAGAGGAGGGGAAGGATTCTTGCATATCGGAGAATGAGGTTCACCAAATAACGATAGCTCAGGATGATGCGCAAGATACGTCTAACATCATCAGTTTACAAAACAAGGATGACGACATCAAGGAGGCCGATCAGTATGTAGAGAAGAACAATGGAGATCAGGAGGAGCAGTTTGTCAATGAAAGTTTGTCCAATGATAATGTCGAGGAAGAGGAAAGCGTCCCGCAAAAACGTACGTCTGCGAGAAAGACGAAATCGGCATCCGCTAAAACATATAGCGACGACGAGATTGCTGACAATTATTACGAGCCGAGCAGCGACAGTCAAGATTCAGTGGAGACGAAATTCAAGTGTAAGGTCTGCTCCAAGCAATACGCCACGCAGAAGGGTCTGAAGAAACACTCGTTGGTCCACGAGAAGAAGTACAAATGTGATGTCTGCTTAAAGATGTTTTACAAGCAGGAGAACATGGAAAACCATCAAAAGATTCATACATCGAAGCCGCACGCGTGCCAGCTCTGTCACGCGTCCTTCTCCAAATCTCAGAGTCTCGTGAGACACTTGAAGTCGCACACGGAGAAAGTAAACGATATGATTAAGCAGATCAATACGAGCGAGCGAAAGGATAATAAGGAACCGAAGAAAGAGTTCAAGAGCGAAGACGATACCGACGACGAGACCGGGCCTGCGAATGAAGCAGACGAATTCGAGAACGCGCCTGAATTGTACAAATGTGAGATTTGCGACCAATATTGTTCATCCTTGAAGAATCTAAGGAGACACGCCCTCGTGCACGGCGACAAGAAGTACTCTTGCACCGTATGCAAGAAATGGTTTTTTAGGCCGGACACGTTGAAGAAACACGCGGAGAAGCATGGGCACGGGTTGTTGGATAATTTGGTGGATGACAACAAGCTATACGATTCGGACGACGACGATATGCCAGGCAACACGATGGATCCCCCGCCAGAAAGCGAGAACGTCAAGAAGGAGGAGAGCGACGAGGAAGGATCTGGAGAATACAAGTGCCAGCACTGCGACAAGGTCATGGCCACTAAAAAAGGTCTGCGACGACACGTGTCGATGCACAAGCCGAAGGCCGAGCCCGTCACCTGCGAGATCTGTAGGAAAGTCTGCGCTAGTCAGGCTCGTCTCGTTCTCCATCAGAGAACGCACAAGCCGAAGGAGAAGGTGCCGCGCGAGTATTTATGTCACATCTGCAGTAAGGTGTACCCGAGCAACTCGTCCCTCACCTACCACATGCGAACCCACACCGGCATCAAGCCGCACGTCTGCAAGACGTGTAATAGCGGCTTCACAACCACGACGAGCTTGGCGAATCACATTCGCATTCACACGGGCGACAAGCCGTTTGTCTGTCACGTGTGTAGCGCCGCGTTTGCTGTGAGCTCGGCTTTTCGCAGGCACTTGACTCGACATACCGGCGAGGCGAATTATCTGTGCAAAACTTGCGGCAAAGCCTTCAAGAGGCTCAGCACGTTGAAGGAGCACACGTACACTCATTCTGGTGAGAAACCGTACGTATGCAAGACGTGCGGCGCCGCGTACAGCCACAGCGGTAGCCTCTTCGCGCACCAGAAGCGCTGCCGCGCTCAGTACGGTGAGATGATTGTCGACGATCACAATCATCATCACATACCACACACAGTCTCTCATATCCATGTGAATATGAATAACGTGAATAACGGGGCGGGAGTGCGACCGGTCGCTGTGATAGGCCAAATGTTCTAA
Protein Sequence: MTSGYFTLPINMDRVCRICLTEGTNLSSIFSSTQEVNDLTDLSQKIQVCGSIEIHEQDGLPSLICDVCIYKASVAHEFRQQCQHSDARLRMYYNKPAKIKPVTDCQDSCTQTDLHTRFVLSKKSDFQEDYFIKEDMQVVASAQEYIQTTDSFPRNEVSLNANQIHMSDEKLFICSIGFEGGKEEGKDSCISENEVHQITIAQDDAQDTSNIISLQNKDDDIKEADQYVEKNNGDQEEQFVNESLSNDNVEEEESVPQKRTSARKTKSASAKTYSDDEIADNYYEPSSDSQDSVETKFKCKVCSKQYATQKGLKKHSLVHEKKYKCDVCLKMFYKQENMENHQKIHTSKPHACQLCHASFSKSQSLVRHLKSHTEKVNDMIKQINTSERKDNKEPKKEFKSEDDTDDETGPANEADEFENAPELYKCEICDQYCSSLKNLRRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDDNKLYDSDDDDMPGNTMDPPPESENVKKEESDEEGSGEYKCQHCDKVMATKKGLRRHVSMHKPKAEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGIKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRAQYGEMIVDDHNHHHIPHTVSHIHVNMNNVNNGAGVRPVAVIGQMF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00264473;
90% Identity: iTF_01405955;
80% Identity: -