Hcun009825.1
Basic Information
- Insect
- Hyphantria cunea
- Gene Symbol
- -
- Assembly
- GCA_003709505.1
- Location
- PKRV01001513.1:589754-600735[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.3e-12 4.3e-09 36.0 0.0 4 39 175 211 172 215 0.89 2 4 4.3e-12 8e-09 35.1 0.3 2 39 227 264 226 268 0.91 3 4 1.6e-15 2.9e-12 46.1 0.3 2 45 282 326 281 326 0.96 4 4 1.2e-17 2.2e-14 52.9 0.0 1 42 333 375 333 377 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTGGCTGGTGAAATGCGAGCCACCGTCGGACGAAGAAGACAGTAATTCACAGTTCGCGCGCAATTATCTATCTAGTCAGTTTACGCCGCAAGTTCATCCAGTAAAATTAGAATCGCCACGAAAGAGCAATGATAGTGTTTCAACGGATTTACTTCAAGACTTGCAGGGAGGTGGTCTGGAAGAGTTGGCACCGCTAGCGCCGGCGGGTCCAGCAGCCACGCCGGTATGTGTCAAGCAGGAACGAGCCTCGCCCCCAGCCACTATGCTGGAGACTCTCGAGTCGGCACCGCATTATGCCAAGAGTACGTCGTTGTTGGATCATCACAGGATTGCAATGAACGTCGAAGAAGTGCCGGATTCCAGAGACTTTGTACCTCTCCTGACTGTTAAAGATGAACCCTCATCCGAAGGAGAACAACCTCAGCTCAGTGGCGAAGACAGCGACTCTTGCAGCAGACAAATGTCGCCAGCTCCTCGGACCAGCCCCAAGAGTTGGACGCAACAAGATATGGAACGAGCTTTGGACGCACTTCGGAAACACCAGATGAGTCTTACTAAGGCATCAGCAACTTATGGCATTCCTTCAACAACGCTGTGGCAGCGTGCGCACCGCCTCGGCATTGACACGCCGAAGAAAGAGGGAGCCGCGAAGTCCTGGAGCGAAGCCAACTTACGCGGAGCTCTGCACGCGTTAAGGACGGGTGCAATATCTGCCAACAAAGCCAGTAAGGCTTACGGTATCCCGAGCAGCACTCTGTACAAGATCGCTCGACGCGAGGGCATCCGTCTGTCAGCGCCGTTCAACGCGGCGCCGACGGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGCCGCCATCCGCGCCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCCACCTACGGCATTCCCACCGGAACACTGTACGGTAGATGTAAGCGCGAAGGAATAGAGTTATCCCGATCCAACCCCACGCCGTGGTCGGAGGATGCCATGGGTGAAGCTCTTGAGGCAGTCAGGATAGGGCAGATGTCGATAAACCAGGCGGCGATACATTTCAACTTGCCGTACTCATCACTTTACGGCAGATTCAAGAGATGCAAGTACCAGATGCAGGGCGCCCTTCAACACCAGCAGCAACAACACGACGTACAAAAAGTAGAGATGGACATTCCACAACACGAATCTCACCAATACTATCACCAACTGCCTGCCCCGCTGGACCAAGACCCCCAAACGTTTGCCCATGTGCCTGGATATCCGCACAATGCCTACATTCACGACCAATACGGCCAATATTACCAATCTTTTACTGGTATAGCGACCAGCTGA
- Protein Sequence
- MPGHGLWLVKCEPPSDEEDSNSQFARNYLSSQFTPQVHPVKLESPRKSNDSVSTDLLQDLQGGGLEELAPLAPAGPAATPVCVKQERASPPATMLETLESAPHYAKSTSLLDHHRIAMNVEEVPDSRDFVPLLTVKDEPSSEGEQPQLSGEDSDSCSRQMSPAPRTSPKSWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEANLRGALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQRALAAIRAGASSVQRAAATYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGALQHQQQQHDVQKVEMDIPQHESHQYYHQLPAPLDQDPQTFAHVPGYPHNAYIHDQYGQYYQSFTGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00282187; iTF_00869544; iTF_00404621; iTF_00237382; iTF_00771795; iTF_00001099; iTF_00000234; iTF_00042544; iTF_00040710; iTF_00677458; iTF_00120404; iTF_01533844; iTF_01246742; iTF_01285462; iTF_01424963; iTF_01342135; iTF_00667262; iTF_01025950; iTF_01030119; iTF_01029137; iTF_00888149; iTF_01028183; iTF_01197643; iTF_01502008; iTF_00637414; iTF_01166516; iTF_00636190; iTF_00908736;
- 90% Identity
- -
- 80% Identity
- -