Aexc027188.1
Basic Information
- Insect
- Agrotis exclamationis
- Gene Symbol
- -
- Assembly
- GCA_950005045.1
- Location
- OX465430.1:1034043-1042549[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.8e-12 5.2e-09 37.2 0.0 4 39 148 184 146 188 0.90 2 4 1.3e-10 1.1e-07 32.9 0.2 4 39 202 237 199 241 0.90 3 4 3.1e-14 2.8e-11 44.4 0.0 2 45 255 299 254 299 0.96 4 4 9.2e-18 8.3e-15 55.7 0.1 1 45 306 351 306 351 0.96
Sequence Information
- Coding Sequence
- ATGCCTGGGCACGGCCTGTCGCAAGTGAAATGCGAACCACTCTCGGATGAAGAAGACAGCGACTCACAATTCGCACACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCGGCAGCCACGCCGGTGTGCGTCAAGCAGGAGCGAGCTGACTCCCCTCCAGCTTCAACACTGGAGACACTGGAGTCAGCACCACATAATGCTAAGAGCGTGTCCTTGTTGGATCGTCACATGGAATTTATGAACGTAACCGAAGTGCCTGATTCCACTGACTTCATGCCGCTATTGGCCATCAAGGATGAACCCTCGTCTGAAGGCGAACAACCACAGCTCAGTGGTGAAGACACGAGTGATTCCTGCGGCCGGCAAGCTTCGCCTGCTCCGCGACACAGCCCCAAGAGCTGGAACCAGCAGGATATGGAGCGAGCTTTGGATGCTCTCAGAAACCACCAAATGAGCCTTACGAAGGCGTCAGCAACGTACGGCATTCCGTCCACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCTTGGAGCGAGAGCGACCTGCGGGGGGCGCTGCACGCGCTGCGGGCCGGGGCCATCTCCGCTAACAAGGCCAGCAAGGCTTATGGTATTCCTAGCAGCACACTGTACAAGATAGCCCGCCGCGAGGGCATTCGACTGTCGGCGCCATTTAACGCGGCGCCAACCGCGTGGCGACGCGCTGACCTGCAGCTGGCGCTGGCCTCCATCCGCTGTGGCGCCAGCTCCGTGCAGCGCGCTGCCACGCAGTATGGGATACCCACAGGAACGCTGTACGGTCGTTGTAAGAGGGAAGGCATCGAGCTATCTCGCTCGAACCCCACGCCGTGGTCCGAAGACGCCATGGGCGAAGCATTGGAAGCTGTCAGGATTGGGCAGATGTCCATAAACCAGGCGGCGATCCATTACAACCTGCCCTACTCCTCTCTGTACGGACGGTTCAAGAGGTGCAAGTATCAGATGCAGAGAGTCCCACAGAACCAGCAGCAATCACAGCACGATCCTCACAAAATGGAGCAAGAGCAGCAACCTCACGAGGTGCAACAATACTACCACCAGGTTCCACCTCACCAAGAAACGGACCCACACACATACGCACACATGCACGAGTATGCCCACACCCACGACCCGTACGGACAGGGGCAGGGGCAATACTATCAAGGTTTTAGTAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPASTLETLESAPHNAKSVSLLDRHMEFMNVTEVPDSTDFMPLLAIKDEPSSEGEQPQLSGEDTSDSCGRQASPAPRHSPKSWNQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSESDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQRVPQNQQQSQHDPHKMEQEQQPHEVQQYYHQVPPHQETDPHTYAHMHEYAHTHDPYGQGQGQYYQGFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -