Aput018137.1
Basic Information
- Insect
- Agrotis puta
- Gene Symbol
- -
- Assembly
- GCA_943137145.2
- Location
- CALPBO020001084.1:10785-17777[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-12 1.6e-09 37.6 0.0 4 39 148 184 145 188 0.89 2 4 1.5e-11 9.9e-09 35.0 0.2 2 39 200 237 199 241 0.93 3 4 1.8e-14 1.1e-11 44.5 0.0 2 45 255 299 254 299 0.96 4 4 1.2e-17 7.9e-15 54.6 0.1 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGGTACGGCCTGTCGCAAGTGAAATGCGAACCGCTCTCGGATGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCTGCAGCCACGCCGGTGTGCGTCAAGCAGGAGCGAGCTGACTCCCCTCCAGCTTCAACGCTGGAGACACTGGAGTCAGCACCACATAATGCTAAGAGTGTGTCCTTGTTGGATCGTCACATGGAATTTATGAACATCACCGAAGTGCCTGATTCCACTGACTTCATGCCGCTATTGGCTGTCAAGGATGAGCCCTCGTCCGAAGGCGAACAACCACATCTCAGTGGTGAAGACACGAGTGATTCCTGCGGCCGGCAAGCTTCGCCTGCTCCGCGGCACAGCCCCAAGAGCTGGACCCAACAAGATATGGAGCGAGCTTTGGATGCTCTCAGAAACCACCAAATGAGCCTTACGAAGGCGTCAGCGACGTACGGCATTCCGTCCACGACGCTGTGGCAACGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCTTGGAGCGAGACCGACCTGCGGGGGGCGCTGCACGCGCTGCGGGCCGGGGCCATCTCCGCTAACAAGGCCAGCAAGGCTTATGGCATTCCTAGTAGCACGCTGTACAAGATAGCCCGCCGGGAGGGCATTCGACTGTCGGCGCCATTTAACGCGGCGCCAACCGCGTGGCGGCGCGCCGACCTGCAGCTGGCGCTCGCCTCCATCCGCTGTGGCGCCAGCTCCGTGCAGCGCGCCGCCACGCAGTATGGGATACCCACAGGAACGCTGTATGGTCGTTGTAAGAGGGAAGGCATCGAGCTATCCCGCTCGAACCCCACGCCGTGGTCCGAAGACGCCATGGGCGAAGCACTGGAAGCTGTCAGGATTGGGCAGATGTCTATAAACCAGGCAGCGATCCACTACAACCTGCCCTACTCCTCTCTGTACGGACGGTTCAAGAGGTGCAAATATCAGATGCAGAGTGTCCCACAGAACCCGCAGCAGTCACAGCACGATCCTCACAAAATGGAGCAAGAGCAGCAACCTCACGAGGTGCAACAGTACTACCACCAGGTTCCACCCCACCAAGAAACGGACCCGCACACATACGCCCACATGCACGAGTATACCCACACCCACGACCCGTATGGACAGGGGCAGTACTATCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERADSPPASTLETLESAPHNAKSVSLLDRHMEFMNITEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNPQQSQHDPHKMEQEQQPHEVQQYYHQVPPHQETDPHTYAHMHEYTHTHDPYGQGQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -