Bvim003648.1
Basic Information
- Insect
- Brachylomia viminalis
- Gene Symbol
- -
- Assembly
- GCA_937001565.2
- Location
- CAKZJP020000032.1:436310-442481[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.2e-11 4.2e-09 37.5 0.0 4 39 128 164 125 168 0.90 2 4 1.7e-10 6.1e-08 33.8 0.3 2 39 180 217 179 221 0.92 3 4 2.7e-14 9.6e-12 46.0 0.1 2 45 235 279 234 279 0.96 4 4 1.1e-17 3.8e-15 56.9 0.0 1 42 286 328 286 330 0.95
Sequence Information
- Coding Sequence
- ATGCCTTTTCAATTCTTATACCTGTCGGTCCTGCAGGGCAGTGGCTTGGAGGAGCTGGCCCCGCTGGCGCCAGCTGGTCCGGCTGCCACGCCAGTGTGTGTCAAACAGGAGCGAGCCGAGTCACCACCAGCTACAACGCTAGAGACCCTTGAGTCAGCACCACAAAATGCCAAGAGCACGTCCCTGTTGGATCGCCATATGGACTTTATGAATGTCACCGAAGTGCCTGACTCCACTGACTTCATGCCGCTGCTGGTTGTCAAGGATGAACCTTCGTCAGAAGGTGAACAACCACATCTTAGCGGTGAAGACACGAGTGACTCCTGCGGCCGGCAGGCTTCGCCCGTGGCACGACACAGCCCCAAGAGTTGGACCCAGCACGACATGGAACGAGCTTTGGATGCTCTCAGAAATCACCAGATGAGCCTTACGAAGGCATCAGCAACCTACGGCATTCCGTCCACTACGCTCTGGCAGCGAGCCCACCGGCTGGGCATCGACACGCCAAAGAAGGAAGGAGCAGCCAAGTCGTGGAGCGAGGCTGATCTGCGAGGGGCTCTGCATGCATTGAGGGCAGGCGCTATCTCTGCGAATAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGTACACTATACAAGATAGCTCGTCGGGAAGGTATCCGCCTGTCGGCGCCCTTCAACGCGGCGCCCACCGCGTGGCGCCGCGCCGACCTGCAGCTGGCGCTGGCGGCCATCCGCTGCGGCGCCAGCTCTGTGCAGCGTGCGGCCACGCAGTATGGGATACCTACAGGAACACTATACGGACGGTGCAAGCGAGAGGGCATCGAGCTATCTCGCTCCAATCCCACGCCATGGTCTGAAGACGCCATGGGCGAAGCACTCGAAGCTGTCAGGGTGGGCCAGATGTCCATTAACCAGGCAGCGATCCACTACAACCTGCCGTACTCCTCGCTCTACGGGAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTCCCACGTAATCAGCAGCAATCACAGCAAGATCCCCACAAAATGGAGCAAGAGCACCAACTCCACGAGGTGCAACAGTACTACCACCAGGTACCATCTCACCAGGAGCCGGACCCGCACACATACGCCCACATGCACGAATATACTCATCAAGACCAGTACGCACAGTACTACCAAGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MPFQFLYLSVLQGSGLEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPQNAKSTSLLDRHMDFMNVTEVPDSTDFMPLLVVKDEPSSEGEQPHLSGEDTSDSCGRQASPVARHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALAAIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPRNQQQSQQDPHKMEQEHQLHEVQQYYHQVPSHQEPDPHTYAHMHEYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -