Atri017233.1
Basic Information
- Insect
- Abrostola tripartita
- Gene Symbol
- -
- Assembly
- GCA_905340225.1
- Location
- HG996497.1:13097445-13107157[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.3e-12 2e-09 37.3 0.0 4 39 176 212 173 216 0.90 2 4 6.2e-11 2.9e-08 33.6 0.3 2 39 228 265 227 269 0.92 3 4 7.5e-15 3.4e-12 46.2 0.2 2 45 283 327 282 327 0.96 4 4 3.5e-18 1.6e-15 56.8 0.1 1 43 334 377 334 379 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGAGTCAAGTGAAATGCGAACCGCTCTCGGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTAGCCAGTCAGCTTTCATCAGAATTTCGTCCAGTGAAATTCGAATTGGCGCGAAATAATGATGGCCGCGTTCCGACCATACTACAAGACTTGCAGGGTGGTGGGCTGGAAGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCCGTGTGCGTCAAGCAGGAGCGGGCTGACTCCCCGCCCGCCGCCACTCTTGAGACGCTGGAGCCGGCGCTGCATACTGCTAAGAGCACAAGCCTACTGGATCGGCACATGGAGTTCATGCAGGTGTGCGACGCGCCCGACTCCACGGACTTCATGCCTCTGCTAGCTGTCAAGGACGAACCTTCGTCTGAGGGAGAGCAACCGCACCTGAGTGGCGAGGACACGAGCGACTCGTGTGGCCGCCAGGCGTCGCCCGCGCCCCGACACAGCCCTAAAAGCTGGACGCAGCACGACATGGAGAGGGCTCTGGACGCGCTGCGGAACCACCAGATGAGCCTCACTAAGGCGTCAGCAACGTATGGCATACCGTCCACGACGCTCTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCCTGGAGCGAGGCCGACCTGCGCGGGGCCCTGCACGCGCTCAGGGCCGGCGCTATATCGGCTAACAAGGCCAGCAAGGCTTACGGTATCCCAAGCAGCACGCTGTACAAGATAGCGCGTCGCGAGGGCATCCGGCTGTCAGCGCCGTTCAACGCGGCCCCTACAGCGTGGCGGCGCGCCGACCTGGCGCATGCGCTGGCCGCCATCCGCGCCGGCGCCTCCTCCGTGCAGCGCGCCGCCACTACCTACGGGATCCCCACCGGCACGTTGTACGGGCGGTGTAAGCGAGAGGGCATCGAGCTGTCCCGCTCTAACCCCACGCCCTGGTCTGAGGACGCCATGGGAGAAGCTCTAGAGGCTGTCAGAGTGGGACAGATGTCTATAAACCAGGCTGCCATCCACTACAACCTGCCTTACTCCTCGCTCTACGGACGATTCAAGAGGTGCAAATATCAAATGCAGAGCGTCTCCCAAAACCAGCAACAGCCTCAAACTGACCTTAAAATGGACGAGCACCAAGGTCACGAGGTCCAACAGTACTACCACCAGGTGCCCCACCACATGGAACACGAGTCGCACACATACTCGCACATGCAAGACTACTCACACGCACACTCGCACGACCAGTACGGACAGTACTACCAGACCTTTAACGGCATTGCGACCAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFAHSYLASQLSSEFRPVKFELARNNDGRVPTILQDLQGGGLEELAPLAPAGPAATPVCVKQERADSPPAATLETLEPALHTAKSTSLLDRHMEFMQVCDAPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLAHALAAIRAGASSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVSQNQQQPQTDLKMDEHQGHEVQQYYHQVPHHMEHESHTYSHMQDYSHAHSHDQYGQYYQTFNGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_00001099;
- 80% Identity
- -