Emi034947.1
Basic Information
- Insect
- Euclidia mi
- Gene Symbol
- -
- Assembly
- GCA_944738845.2
- Location
- CALYKX020000340.1:2586020-2603529[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-12 6.2e-09 37.6 0.0 4 39 150 186 147 190 0.89 2 4 1.3e-10 1e-07 33.7 0.3 2 39 202 239 201 243 0.92 3 4 6.7e-14 5.4e-11 44.2 0.0 2 45 257 301 256 301 0.96 4 4 8.1e-18 6.4e-15 56.8 0.0 1 42 308 350 308 352 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGTCTGTCTCAGGTGAAATGCGAGCCGCCGTCGGACGAAGAGGATAGTAATTCGCAGTTCGCGCACACTTATCTATCAAGTCAGGGCAGTGGCTTGGAGGAGTTGGCACCGCTGGCGCCGGCGGGCCCGGCCGCCACGCCGGTGTGCGTCAAACAGGAGCGAGCCTCTCCGCCCGCTGCCATGCTGGAGACCCTGGAGTCAGCGCCTCATCATGCAAAGATTGCTGGCGCGTCACTTCTGGGGCGACACGTCATGTCGATGATGAACTCCAGCGAAGTGCCAGACTCCACGGACTTCATGCCTCTCCTGTCTGTTAAAGACGAACCCTCGTCTGAAGGTGAACAACCACATCTCAGTGGTGAAGACACTAGTGACTCCTGCGGGCGTCAAATGTCGCCTGTGCCTCGCAACAGCCCTAAGAGTTGGACGCAACAAGACATGGAGAGGGCGCTGGATGCGCTCAGGAATCATCAGATGAGCCTGACCAAGGCTTCAGCTACCTACGGCATTCCGTCCACAACACTCTGGCAACGTGCTCACAGACTCGGCATCGACACGCCGAAGAAAGAGGGCGCTGCCAAATCCTGGAGCGAAGCTGACTTGCGAGGAGCTTTACATGCATTAAGAGCGGGGGCTATATCCGCTAATAAAGCTAGTAAGGCTTATGGTATACCGAGCAGTACTCTCTACAAAATAGCACGTCGCGAAGGGATCCGTCTGTCCGCTCCGTTTAACGCGGCGCCTACGTCTTGGCGCCGAGCTGACCTGCAACTTGCGCTGGCCTCTATACGATGTGGGGCTAGCTCAGTACAACGTGCTGCCACTACGTATGGAATACCTACGGGGACACTTTACGGTCGATGTAAACGTGAAGGCATCGAGTTGTCGCGGTCGAATCCAACGCCATGGTCAGAAGACGCCATGGGAGAAGCACTCGAAGCAGTCAGAGTCGGCCAGATGTCGATAAACCAAGCGGCGATTCACTACAATTTGCCGTATTCTTCGCTGTACGGCAGGTTCAAGAGGTGCAAATACCAAATGCAGGGCGTCCCGCAAAACCAGGAGCATCCACAAGATCTTCAAAAGTCTGAAATGGAAACTCAAAGCCACGAGGTTCACCATTACTATAACCAAGTACCGCCTGCTCATGACCACAGTCAGCACACATTCACACATATGACAGAATATCCCCAACACACACATATGCACGACCAATATGGTCAGTATTACCAGTCTTTCAACAGTATAGCGACTAGCTGA
- Protein Sequence
- MPGHGLSQVKCEPPSDEEDSNSQFAHTYLSSQGSGLEELAPLAPAGPAATPVCVKQERASPPAAMLETLESAPHHAKIAGASLLGRHVMSMMNSSEVPDSTDFMPLLSVKDEPSSEGEQPHLSGEDTSDSCGRQMSPVPRNSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALASIRCGASSVQRAATTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQEHPQDLQKSEMETQSHEVHHYYNQVPPAHDHSQHTFTHMTEYPQHTHMHDQYGQYYQSFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- -
- 80% Identity
- -