Pfla030104.1
Basic Information
- Insect
- Polymixis flavicincta
- Gene Symbol
- -
- Assembly
- GCA_949987655.1
- Location
- OX465189.1:22583766-22600759[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-12 3.6e-09 37.6 0.0 4 39 118 154 115 158 0.90 2 4 1.1e-10 5.2e-08 33.9 0.3 2 39 170 207 169 211 0.92 3 4 1.6e-14 7.3e-12 46.2 0.1 2 45 225 269 224 269 0.96 4 4 7.1e-18 3.3e-15 56.9 0.0 1 42 276 318 276 320 0.95
Sequence Information
- Coding Sequence
- ATGAAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCGGCTGCCACGCCAGTGTGTGTCAAGCAGGAGCGAGCCGAGTCACCACCAGCTGCAACGCTAGAGACGCTCGAGTCTGCACCACGTAATGCCAagAGCACGTGCCTGCTGGATTGCCACATGGACTTTATGAACGTCACCGAAGTGCCTGATCCCACTGACTTCATGCCGCTGCTCGTTGTCAAGGATGAACCCTCGTCCGAAGGTGAACAACCACATCTTAGCGGTGAAGACACGAGCGACTCCTGCAGCCGACAAGCTTCGCCCGCGCCACGACACAGCCCCAAGAGTTGGACCCAGCACGACATGGAACGAGCTTTGGACGCTCTCAGAAACCACCAGATGAGCCTTACGAAGGCATCAGCAACCTACGGCATTCCGTCCACCACGCTCTGGCAGAGAGCCCACCGGTTGGGCATCGACACGCCAAAGAAGGAAGGAGCGGCCAAGTCCTGGAGCGAGGCTGATTTACGAGGGGCTCTGCATGCATTGAGAGCAGGCGCTATCTCTGCGAATAAGGCCAGCAAAGCTTATGGCATTCCCAGCAGCACACTGTACAAGATAGCCCGCCGGGAAGGCATCCGCCTGTCGGCGCCCTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGGCGCGCGCGCTCGCCGCCATCCGCTGCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGCAGTACGGGATACCCACTGGAACGCTATATGGACGGTGCAAGCGAGAGGGCATCGAGCTATCTCGCTCCAATCCCACGCCGTGGTCTGAAGATGCCATGGGCGAAGCACTCGAAGCTGTCAGGGTGGGCCAGATGTCCATCAACCAGGCAGCGATCCACTACAACCTACCCTACTCCTCGCTCTACGGAAGATTCAAGAGGTGCAAGTATCAGATGCAGGGTGTCCCACAAAATCAGCAGCAACCACAGCAAGATCCCCACAACATGGAGCAAGAACAACCACCCCATGAGGTGCAACAGTACTACCACCAGGTACCACCCCACCAGGAACCAGACCCGCACACATACGCCCACATGCACGAATATACTCACCAAGACCAGTACGCACAGTACTACCAGGGTTTTAACAGTATTGCGACCAGCTGA
- Protein Sequence
- MKGSGLEELAPLAPAGPAATPVCVKQERAESPPAATLETLESAPRNAKSTCLLDCHMDFMNVTEVPDPTDFMPLLVVKDEPSSEGEQPHLSGEDTSDSCSRQASPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLARALAAIRCGASSVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQGVPQNQQQPQQDPHNMEQEQPPHEVQQYYHQVPPHQEPDPHTYAHMHEYTHQDQYAQYYQGFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- iTF_01029137;
- 80% Identity
- -