Xsex011514.1
Basic Information
- Insect
- Xestia sexstrigata
- Gene Symbol
- -
- Assembly
- GCA_941918865.2
- Location
- CALNXB020000181.1:3548321-3568816[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.3e-12 2.1e-09 37.5 0.0 4 39 148 184 145 188 0.90 2 4 2.8e-11 1.8e-08 34.5 0.4 5 39 203 237 199 241 0.92 3 4 2.1e-14 1.4e-11 44.5 0.0 2 45 255 299 254 299 0.96 4 4 2.6e-18 1.7e-15 57.0 0.1 1 43 306 349 306 351 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGGCTGTCGCAAGTGAAATGCGAACCGCTCTCAGACGAAGAAGACAGCGACTCACAATTCGCGCACAGTTATCTATCCAGTCAGGGTAGTGGCTTGGAGGAGCTGGCACCGTTGGCGCCGGCGGGTCCGGCCGCCACGCCGGTGTGTGTCAAGCAGGAGCGCGCGGAGTCCCCACCAGCCACCATGCTGGAGACACTCGAGTCAGCCCCACATAATGCCAAGAGCGCGTCCCTATTGGATCGTCACATGGAATTTATGAACGTCACCGAAGTGCCTGACTCCACTGACTTCATGCCGTTGCTGGCTGTGAAGGATGAACCCTCGTCCGAAGGTGAACAACTACATCTTAGCGGTGAAGACACAAGCGACTCCTGCGGCCGACAAGTCTCGCCCGCGCCGCGACACAGCCCCAAGAGCTGGACCCAGCACGACATGGAGCGAGCTTTGGACGCTCTCAGAAACCACCAGATGAGCCTTACAAAGGCATCAGCAACGTACGGCATCCCGTCCACGACGCTGTGGCAGCGCGCGCACCGGCTGGGCATCGACACGCCCAAGAAGGAGGGCGCCGCCAAGTCGTGGAGCGAGCCCCACCTGCGCGCGGCGCTGCAGGCGCTGCGGGCCGGGGCCATCTCCGCCAACAAGGCCAGCAAGGCTTATGGCATTCCCAGCAGCACTCTATACAAGATAGCTAGGCGAGAGGGCATCCGGCTGTCGGCGCCATTCAACGCAGCTCCGACCGCCTGGCGCCGCGCTGACCTGCAGCTAGCACTCGCCTCCATCCGCTGCGGCGCCAGCTCGGTGCAGCGTGCCGCCACGCAGTATGGGATACCTACAGGAACGTTGTATGGTCGGTGCAAGCGAGAAGGTATCGAGCTGTCCCGCTCTAACCCCACGCCGTGGTCCGAAGACGCCATGGGTGAAGCACTCGAAGCTGTCAGGGTGGGGCAGATGTCCATCAACCAGGCCGCGATACACTACAACCTGCCGTATTCTTCTCTGTACGGACGGTTCAAGAGGTGCAAGTATCAGATGCAGAGTGTCCCACAAAACCAGCAGCAATCGCAGCAAGATACCCTCAGAGTGGAGCAACAGCAGCAACCGTACGAGCTGCAGCAGTACTACCCGCACCACGAGCCGGCCGCACTCGCGCACCAGCACACCCACCAGCACACCCACACGCACGACCAGCACGCCCAGGGCCAGTACTATCAGGGTTTTAGCAGTATAGCGACCAGCTGA
- Protein Sequence
- MPGYGLSQVKCEPLSDEEDSDSQFAHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATMLETLESAPHNAKSASLLDRHMEFMNVTEVPDSTDFMPLLAVKDEPSSEGEQLHLSGEDTSDSCGRQVSPAPRHSPKSWTQHDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEPHLRAALQALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLQLALASIRCGASSVQRAATQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQMQSVPQNQQQSQQDTLRVEQQQQPYELQQYYPHHEPAALAHQHTHQHTHTHDQHAQGQYYQGFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- -
- 80% Identity
- -