Tjac000660.1
Basic Information
- Insect
- Tyria jacobaeae
- Gene Symbol
- -
- Assembly
- GCA_947561695.1
- Location
- OX387222.1:903687-922143[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.2e-12 6.2e-09 35.9 0.0 4 39 187 223 184 227 0.89 2 4 1.5e-11 1.3e-08 34.9 0.2 2 39 239 276 238 280 0.93 3 4 5.3e-15 4.6e-12 46.0 0.1 2 45 294 338 293 338 0.96 4 4 3.8e-17 3.2e-14 52.8 0.0 1 42 345 387 345 389 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCTACGGACTGTCGCTGGTGAAATGCGAGCCTCCGTCTGACGAAGAAGATAGTAATTCACAGTTCGCGCGCAATTATCTATCTAGTCAGGTCATGACACCAGTGCCTAGGGCGCTATACTTAATTCAGGGTAAAGCTCAAGCATATCTTGGGACTCTGATACCAACTATAACTACAACAGTGTTCAAACTACAAGATCTCAGCCACGAGGAAAGTGGTCTGGAAGAACTGGCTCCGCTGGCACCAGCAGGACCTGCTGCCACCCCGGTATGTGTCAAACAGGAACGAGCGTCGCCTCCAGCTACAATGCTAGAGACACTTGAGTCAGCACCGCATCATGCCAAGAGCACGTCACTGTTGGGCCATCATTTGTCAGTGATGAACGCTAGTGAAGTACCAGACTCCAGGGATTTCGTACCACTCTTAGCTGTAAAAGATGAACCCTCATCAGAAGGAGAACAACCACAGCTCAGCGGCGAAGACACAAGTGACTCTTGCAGCAGACAGATGTCACCTGCGCCGAGAAACAGCCCCAAGAGTTGGACGCAACAAGATATGGAACGAGCGCTGGACGCACTTCGGAAACACCAGATGAGTCTTACCAAGGCATCGGCAACTTATGGTATCCCTTCGACAACGCTTTGGCAACGCGCACATCGTCTTGGCATCGACACGCCGAAAAAGGAGGGAGCAGCCAAGTCGTGGAGCGAGACCGACCTGCGAGGGGCTCTACACGCCTTGAGGGCGGGGGCTATATCTGCTAACAAAGCTAGCAAGGCTTATGGTATTCCTAGCAGCACTTTGTACAAGATAGCTCGTCGTGAAGGTATCCGTTTGTCGGCGCCATTCAATGCGGCGCCAACGTCGTGGCGGCGCGCCGACCTGCAGCTCGCGCTTGCCGCCATACGCTGCGGCGCCAGTTCCGTGCAACGCGCAGCCTCCACCTATGGCATCCCCACTGGAACGCTGTATGGTCGGTGTAAGCGCGAAGGTATCGAGCTGTCCCGGTCCAACCCCACGCCCTGGTCTGAGGATGCCATGGGCGAGGCACTTGAAGCAGTCAGGATTGGCCAGATGTCAATAAATCAGGCGGCGATACATTTCAACTTGCCGTATTCCTCGCTGTACGGCAGATTCAAGAGATGCAAGTACCAGATGCAGGGTGGCCCTCAAAACCAGCAGCAGCAACAAGGCTTTCAAAAAATGGAAGTGGATATCCCACAACACGAGGCTAACCATTACTACCATCAATTGCCAACCACACGTGATCTCGACCCACAAACATATACCTACATGTCTGAATATCCCCACAATACCCATGGACACGACCAATACGGCCAATATTACCAATCTTTCAGCAGTATAGCGACCAGCTGA
- Protein Sequence
- MPGYGLSLVKCEPPSDEEDSNSQFARNYLSSQVMTPVPRALYLIQGKAQAYLGTLIPTITTTVFKLQDLSHEESGLEELAPLAPAGPAATPVCVKQERASPPATMLETLESAPHHAKSTSLLGHHLSVMNASEVPDSRDFVPLLAVKDEPSSEGEQPQLSGEDTSDSCSRQMSPAPRNSPKSWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSETDLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTSWRRADLQLALAAIRCGASSVQRAASTYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHFNLPYSSLYGRFKRCKYQMQGGPQNQQQQQGFQKMEVDIPQHEANHYYHQLPTTRDLDPQTYTYMSEYPHNTHGHDQYGQYYQSFSSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00823839;
- 90% Identity
- -
- 80% Identity
- -